Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.3e-104 381.7 195 100.0
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 8.5e-84 313.9 177 87.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 1.1e-83 313.5 177 91.5
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 8.0e-82 307.4 177 90.4
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 5.7e-80 301.2 177 86.4
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 4.8e-79 298.1 177 85.9
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 5.9e-77 291.2 166 87.3
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 5.9e-77 291.2 166 87.3
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 5.0e-76 288.1 177 84.2
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 5.0e-76 288.1 177 80.8
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 4.2e-75 285.0 177 80.2
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 4.2e-75 285.0 177 81.9
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 4.2e-75 285.0 177 79.1
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 9.5e-75 283.9 177 83.1
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 2.1e-74 282.7 177 78.5
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 1.0e-73 280.4 173 80.3
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.0e-73 280.4 177 81.4
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 3.0e-73 278.9 199 72.4
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 5.2e-73 278.1 177 78.5
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 8.8e-73 277.3 177 78.5
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 1.2e-72 276.9 183 73.8
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 2.6e-72 275.8 181 76.8
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 2.6e-72 275.8 177 78.0
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.4e-72 275.4 171 80.7
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 1.3e-71 273.5 177 78.0
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.3e-71 273.5 175 77.7
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 1.3e-71 273.5 177 75.7
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 2.8e-71 272.3 172 78.5
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 3.7e-71 271.9 177 76.3
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 4.9e-71 271.6 177 79.1
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 8.3e-71 270.8 177 74.6
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 1.1e-70 270.4 177 76.8
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 2.4e-70 269.2 175 73.7
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 3.1e-70 268.9 177 76.8
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 5.4e-70 268.1 175 76.0
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 5.4e-70 268.1 174 75.3
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 7.0e-70 267.7 177 76.3
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 9.2e-70 267.3 176 75.6
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 9.2e-70 267.3 176 76.7
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 1.6e-69 266.5 177 72.3
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.6e-69 266.5 175 75.4
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 2.7e-69 265.8 177 76.8
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 3.5e-69 265.4 175 75.4
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 3.5e-69 265.4 175 73.7
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 5.9e-69 264.6 173 76.3
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.0e-68 263.8 177 74.6
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 2.3e-68 262.7 176 75.0
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 2.9e-68 262.3 177 71.8
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 5.0e-68 261.5 167 76.0
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 3.3e-67 258.8 171 75.4
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 7.3e-67 257.7 176 74.4
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 1.6e-66 256.5 167 74.9
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 1.6e-66 256.5 175 73.1
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 3.6e-66 255.4 182 68.1
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 4.7e-66 255.0 177 72.3
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 4.0e-65 251.9 177 73.4
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 6.8e-65 251.1 175 69.7
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 6.8e-65 251.1 177 67.2
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.2e-64 250.4 167 70.1
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 3.4e-64 248.8 167 70.1
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 4.4e-64 248.4 175 72.0
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 4.4e-64 248.4 177 68.4
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 9.8e-64 247.3 217 63.1
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 9.8e-64 247.3 146 87.7
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.9e-63 245.7 177 67.2
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 4.9e-63 245.0 169 71.0
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 6.4e-63 244.6 175 71.4
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 8.3e-63 244.2 177 66.7
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 1.1e-62 243.8 182 64.3
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 2.4e-62 242.7 177 66.7
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 2.3e-60 236.1 175 66.3
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 3.0e-60 235.7 148 79.1
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 3.0e-60 235.7 140 82.1
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 5.0e-60 235.0 140 82.1
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 2.1e-58 229.6 139 82.0
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 5.2e-57 224.9 177 63.8
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 1.1e-54 217.2 183 62.3
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 4.1e-54 215.3 139 72.7
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 1.2e-53 213.8 158 69.0
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 7.5e-48 194.5 123 77.2
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.7e-47 193.4 120 78.3
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 9.2e-46 187.6 140 70.0
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.6e-45 185.3 110 82.7
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 1.8e-41 173.3 116 71.6
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 3.8e-39 165.6 209 49.3
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 3.8e-39 165.6 188 50.0
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 6.2e-34 148.3 126 63.5
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.8e-33 146.7 135 60.0
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.5e-32 143.7 138 62.3
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 7.6e-32 141.4 90 80.0
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 4.9e-31 138.7 89 75.3
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 8.4e-31 137.9 80 81.2
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 1.1e-27 127.5 71 85.9
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 1.6e-26 123.6 183 43.7
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.9e-22 110.2 130 41.5
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 4.2e-22 109.0 74 75.7
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 7.9e-21 104.8 184 34.8
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 1.3e-20 104.0 192 36.5
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.3e-20 104.0 184 34.8
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 1.9e-19 100.1 60 80.0
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 7.4e-19 98.2 184 33.2
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 2.1e-18 96.7 59 78.0
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 1.8e-17 93.6 60 78.3
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 7.6e-16 88.2 155 39.4
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.7e-15 87.0 129 41.9
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 4.2e-14 82.4 60 68.3
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 8.7e-12 74.7 46 73.9
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 2.5e-11 73.2 65 61.5
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 9.6e-11 71.2 59 59.3
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 4.5e-08 62.4 33 84.8
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 3.8e-07 59.3 53 54.7
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 2.5e-06 56.6 34 76.5
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 2.5e-06 56.6 34 76.5


User provided reference genes

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