Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 3.3e-118 428.3 208 100.0
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.3e-50 203.0 163 60.7
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 3.0e-50 202.6 182 59.3
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.5e-49 199.5 164 58.5
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.5e-49 199.5 164 58.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.1e-48 196.4 182 52.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 4.0e-47 192.2 185 53.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 5.2e-47 191.8 163 56.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.7e-45 186.8 165 52.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.2e-45 186.4 179 50.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.9e-45 186.0 168 54.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 4.9e-45 185.3 164 52.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 3.2e-44 182.6 163 52.8
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 3.2e-44 182.6 163 52.8
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 3.2e-44 182.6 163 52.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 5.4e-44 181.8 161 54.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 7.0e-44 181.4 197 47.2
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.0e-44 181.4 197 47.2
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 7.0e-44 181.4 161 53.4
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 9.2e-44 181.0 161 52.2
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.2e-43 180.6 165 51.5
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.6e-43 180.3 165 52.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-43 179.9 197 46.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.1e-43 179.9 168 52.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.7e-43 179.5 164 51.8
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.7e-43 179.5 164 50.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 4.6e-43 178.7 161 51.6
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.6e-43 178.7 182 48.4
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.6e-43 178.7 182 48.4
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 7.8e-43 177.9 198 46.0
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.0e-42 177.6 175 51.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.0e-42 177.6 163 49.7
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.3e-42 177.2 159 52.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-42 177.2 164 50.0
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-42 177.2 164 50.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.7e-42 176.8 158 53.2
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.3e-42 176.4 161 50.3
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.0e-42 176.0 184 50.0
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.9e-42 175.6 158 51.9
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 3.9e-42 175.6 167 53.3
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.1e-42 175.3 161 52.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.1e-42 175.3 175 50.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 6.6e-42 174.9 195 47.2
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.5e-41 173.7 193 47.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.5e-41 173.7 205 44.4
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.5e-41 173.7 157 52.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.9e-41 173.3 175 50.3
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.9e-41 173.3 175 50.3
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.9e-41 173.3 164 50.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.9e-41 173.3 163 49.7
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.9e-41 173.3 161 50.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.5e-41 172.9 220 41.4
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.3e-41 172.6 165 49.1
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 5.6e-41 171.8 192 46.9
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 5.6e-41 171.8 197 46.2
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 7.3e-41 171.4 158 50.0
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-41 171.4 157 52.2
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 9.5e-41 171.0 164 50.0
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.2e-40 170.6 164 50.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.6e-40 170.2 175 49.7
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.1e-40 169.9 202 46.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 3.6e-40 169.1 168 48.2
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.7e-40 168.7 165 49.1
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 4.7e-40 168.7 155 51.0
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.1e-39 167.5 193 48.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.4e-39 167.2 163 48.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.4e-39 167.2 157 49.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.4e-39 167.2 157 49.0
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.1e-39 166.0 208 43.3
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.1e-39 166.0 191 45.0
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 4.0e-39 165.6 153 53.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.2e-38 164.1 160 48.1
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.5e-38 163.7 184 46.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.6e-38 162.9 184 46.7
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 4.4e-38 162.2 163 48.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 7.5e-38 161.4 149 51.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 9.9e-38 161.0 153 52.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.2e-37 159.8 159 48.4
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 8.3e-37 157.9 188 45.2
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-36 157.1 176 42.0
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-36 157.1 176 42.0
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-36 157.1 176 42.0
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-36 157.1 176 42.0
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.4e-36 156.4 176 42.0
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.2e-36 156.0 214 40.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 4.1e-36 155.6 214 41.1
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.4e-36 155.2 157 44.6
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 7.1e-36 154.8 166 44.0
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-35 154.1 192 43.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-35 154.1 192 43.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-35 154.1 157 44.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 2.1e-35 153.3 179 44.1
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.1e-35 153.3 151 45.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 7.8e-35 151.4 183 43.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.7e-34 150.2 140 47.9
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.0e-34 149.4 191 41.4
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.9e-33 146.7 138 49.3
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 4.7e-32 142.1 150 47.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.1e-32 141.4 157 40.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 5.2e-31 138.7 181 44.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 8.9e-31 137.9 139 47.5
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-30 137.1 176 39.8
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.0e-30 136.7 146 43.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 4.4e-30 135.6 159 42.1
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 7.6e-30 134.8 167 41.9
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 7.6e-30 134.8 176 37.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.3e-29 134.0 138 47.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.8e-29 132.5 151 40.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 3.8e-29 132.5 181 39.8
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.9e-29 132.1 144 43.8
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.4e-28 130.6 140 45.7
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 3.2e-28 129.4 109 52.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.4e-28 128.6 125 47.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 7.1e-28 128.3 134 47.8
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.6e-27 127.1 139 46.8
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 8.7e-26 121.3 128 46.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.5e-25 120.6 184 38.6
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 4.3e-25 119.0 104 51.9
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 5.6e-25 118.6 116 47.4
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 9.6e-25 117.9 105 50.5
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.7e-24 115.5 102 52.9
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.2e-22 110.9 174 39.1
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.2e-22 110.9 174 39.1
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 4.4e-22 109.0 139 37.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.6e-19 100.5 170 37.1
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.9e-17 93.6 83 48.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 7.3e-17 91.7 141 34.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-16 90.9 103 41.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.6e-16 89.4 142 31.7
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.1e-16 88.2 97 41.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.4e-15 87.4 59 62.7
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.8e-15 87.0 71 56.3
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 7.6e-14 81.6 71 53.5
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.9e-12 77.0 126 34.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 6.0e-11 72.0 104 36.5
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 5.1e-10 68.9 87 42.5
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.5e-09 66.6 56 51.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.5e-09 66.6 57 54.4
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 3.3e-09 66.2 65 44.6
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 7.4e-09 65.1 57 50.9
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.3e-08 64.3 73 43.8
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.1e-08 63.5 61 44.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.8e-08 63.2 48 54.2
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-08 63.2 60 45.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 6.2e-08 62.0 68 42.6
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.8e-07 60.5 61 47.5
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.5e-06 55.8 48 52.1
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 5.8e-06 55.5 36 66.7


User provided reference genes

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