Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 3.2e-156 555.1 288 100.0
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 2.0e-105 386.3 297 70.7
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 2.0e-105 386.3 297 70.7
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 3.2e-103 379.0 296 69.6
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 3.5e-102 375.6 298 70.1
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 1.9e-100 369.8 288 69.1
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.3e-99 367.1 288 69.1
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 6.2e-99 364.8 295 68.8
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 1.1e-98 364.0 289 68.9
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 1.2e-97 360.5 276 70.3
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 2.9e-96 355.9 296 66.9
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 2.3e-93 346.3 230 75.7
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 5.1e-93 345.1 292 62.3
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 1.1e-92 344.0 303 62.4
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 2.1e-91 339.7 285 65.3
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 8.1e-91 337.8 282 61.3
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 8.1e-91 337.8 285 63.5
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 8.1e-91 337.8 284 60.9
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 3.1e-90 335.9 298 59.7
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 4.0e-90 335.5 288 62.2
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 5.3e-90 335.1 287 61.7
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 9.0e-90 334.3 292 60.3
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.5e-89 333.6 271 63.1
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 1.5e-89 333.6 271 63.1
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 2.0e-89 333.2 283 60.8
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 2.0e-89 333.2 300 59.7
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 3.4e-89 332.4 287 61.0
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 4.5e-89 332.0 289 62.6
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 7.6e-89 331.3 285 62.1
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 1.0e-88 330.9 262 62.6
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 1.0e-88 330.9 231 71.0
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 2.9e-88 329.3 261 62.1
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 4.9e-88 328.6 297 61.6
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 4.9e-88 328.6 246 67.5
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 8.4e-88 327.8 288 60.4
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 8.4e-88 327.8 268 64.2
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.1e-87 327.4 270 62.2
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.1e-87 327.4 266 61.7
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 2.5e-87 326.2 289 59.9
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 3.2e-87 325.9 296 58.4
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 3.2e-87 325.9 266 61.3
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 5.5e-87 325.1 234 67.1
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 9.3e-87 324.3 266 61.3
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 1.2e-86 323.9 267 62.2
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.6e-86 323.6 295 59.7
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 4.6e-86 322.0 287 59.9
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 7.9e-86 321.2 290 60.3
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 7.9e-86 321.2 274 60.9
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 7.9e-86 321.2 240 65.8
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 1.3e-85 320.5 294 56.5
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 2.3e-85 319.7 236 64.4
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 3.0e-85 319.3 277 58.8
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 3.9e-85 318.9 286 59.4
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 3.9e-85 318.9 247 62.8
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 5.1e-85 318.5 288 60.1
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 8.7e-85 317.8 230 67.4
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 3.3e-84 315.8 274 59.1
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 5.7e-84 315.1 247 62.8
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 5.7e-84 315.1 247 62.8
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 7.4e-84 314.7 233 65.7
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 7.4e-84 314.7 233 65.7
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 7.4e-84 314.7 233 65.7
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 7.4e-84 314.7 284 58.1
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 1.6e-83 313.5 248 63.7
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.6e-83 313.5 289 59.2
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 2.1e-83 313.2 233 67.0
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 3.7e-83 312.4 233 66.1
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 3.7e-83 312.4 233 65.2
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 6.3e-83 311.6 268 59.3
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 8.2e-83 311.2 268 61.2
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.1e-82 310.8 235 66.0
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 1.4e-82 310.5 233 65.7
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.8e-82 310.1 230 65.2
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 3.1e-82 309.3 300 54.7
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 4.1e-82 308.9 288 56.9
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 5.3e-82 308.5 256 61.3
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 1.2e-81 307.4 285 57.5
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 1.2e-81 307.4 233 64.4
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 1.5e-81 307.0 288 58.0
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 1.5e-81 307.0 256 60.9
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 2.0e-81 306.6 286 57.7
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 5.9e-81 305.1 263 59.7
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 5.9e-81 305.1 287 57.8
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 1.0e-80 304.3 287 57.5
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 1.3e-80 303.9 246 62.2
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 2.2e-80 303.1 283 57.6
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 5.0e-80 302.0 218 68.8
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 8.5e-80 301.2 227 65.6
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 8.5e-80 301.2 227 65.6
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 1.1e-79 300.8 260 58.5
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 1.4e-79 300.4 276 56.9
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 2.7e-78 296.2 223 64.6
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 6.7e-77 291.6 267 58.8
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 4.3e-76 288.9 230 62.2
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 1.6e-75 287.0 284 54.9
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 2.9e-72 276.2 323 48.0
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 5.1e-69 265.4 293 51.5
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.7e-64 250.4 222 59.0
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 5.5e-63 245.4 286 49.0
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 7.2e-63 245.0 230 55.2
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 3.5e-57 226.1 162 70.4
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 8.2e-51 204.9 284 44.7
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 5.9e-49 198.7 295 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 3.8e-48 196.1 209 51.7
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 1.9e-47 193.7 158 62.0
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 3.2e-47 193.0 140 67.1
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 4.4e-44 182.6 183 53.6
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 4.1e-42 176.0 239 41.0
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 7.7e-41 171.8 214 44.4
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 1.9e-39 167.2 193 43.0
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.2e-39 166.0 203 47.3
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 2.3e-37 160.2 161 50.3
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 4.1e-34 149.4 192 42.7
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 1.2e-33 147.9 87 77.0
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 3.3e-31 139.8 135 57.0
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 1.3e-24 117.9 91 64.8
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 8.6e-24 115.2 83 68.7
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 1.0e-21 108.2 119 48.7
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 8.9e-21 105.1 87 59.8
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 7.0e-18 95.5 60 76.7
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 8.9e-13 78.6 222 29.7
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 4.4e-12 76.3 49 69.4
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 6.0e-09 65.9 105 43.8
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 8.6e-08 62.0 34 82.4
PRCOL_00006041 Prasinoderma coloniale HOM05D006484 ORTHO05D008002 2.8e-06 57.0 160 30.6
VMungo0464G0201 Vigna mungo HOM05D000051 ORTHO05D000015 4.7e-06 56.2 61 55.7


User provided reference genes

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