Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 5.6e-90 334.3 179 100.0
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 7.1e-53 211.1 181 70.2
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.0e-51 205.7 193 66.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 7.4e-50 201.1 184 69.0
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.6e-49 199.9 186 67.2
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 4.1e-48 195.3 185 64.3
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.2e-44 183.7 150 68.0
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 9.1e-40 167.5 119 77.3
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 9.7e-34 147.5 136 60.3
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.8e-32 143.3 136 59.6
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.4e-32 142.9 175 49.1
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 4.1e-32 142.1 182 49.5
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 7.0e-32 141.4 117 64.1
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.1e-32 141.0 121 62.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.2e-31 140.6 181 50.3
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.5e-31 140.2 107 66.4
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 2.6e-31 139.4 100 72.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 7.7e-31 137.9 181 50.3
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.7e-31 137.9 134 58.2
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.7e-31 137.9 134 58.2
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.0e-30 137.5 184 49.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.7e-30 136.7 179 51.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.7e-30 136.7 182 51.1
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.7e-30 136.7 161 49.1
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.7e-30 136.7 184 51.1
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.9e-30 136.0 187 50.8
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 3.8e-30 135.6 183 50.8
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 5.0e-30 135.2 183 50.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 5.0e-30 135.2 183 50.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 5.0e-30 135.2 98 70.4
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 8.5e-30 134.4 180 48.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 8.5e-30 134.4 122 61.5
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.9e-29 133.3 138 55.8
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 2.5e-29 132.9 92 72.8
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 3.2e-29 132.5 131 58.0
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 3.2e-29 132.5 129 56.6
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 3.2e-29 132.5 180 49.4
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 4.2e-29 132.1 180 49.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 4.2e-29 132.1 177 49.2
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.2e-29 132.1 125 57.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 5.5e-29 131.7 119 61.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 5.5e-29 131.7 125 56.8
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 7.2e-29 131.3 186 50.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 7.2e-29 131.3 134 54.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 9.4e-29 131.0 184 48.4
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.2e-28 130.6 187 50.3
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.2e-28 130.6 185 49.7
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.6e-28 130.2 127 57.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.1e-28 129.8 175 46.3
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.7e-28 129.4 179 49.2
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-28 129.4 186 50.5
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.7e-28 129.4 181 50.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.7e-28 129.4 128 57.0
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.7e-28 129.4 128 57.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 2.7e-28 129.4 180 47.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.7e-28 129.4 132 55.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.6e-28 129.0 186 46.8
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 3.6e-28 129.0 99 65.7
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.6e-28 129.0 90 71.1
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.6e-28 129.0 90 71.1
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.6e-28 129.0 90 71.1
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.6e-28 129.0 181 48.1
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.6e-28 129.0 176 47.2
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 3.6e-28 129.0 172 47.7
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 4.7e-28 128.6 92 68.5
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.7e-28 128.6 186 50.0
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.7e-28 128.6 186 51.1
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 8.0e-28 127.9 164 51.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 8.0e-28 127.9 94 68.1
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.3e-27 126.3 119 58.8
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 3.0e-27 125.9 181 48.6
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 3.9e-27 125.6 199 45.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 5.2e-27 125.2 100 65.0
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 5.2e-27 125.2 95 65.3
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 5.2e-27 125.2 122 57.4
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 8.8e-27 124.4 178 48.3
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.1e-26 124.0 95 64.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.1e-26 124.0 185 47.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.5e-26 123.6 199 46.7
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.5e-26 123.6 115 59.1
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.0e-26 123.2 179 46.9
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.0e-26 123.2 124 54.8
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.6e-26 122.9 90 67.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.6e-26 122.9 107 60.7
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-26 122.5 179 48.0
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 3.3e-26 122.5 183 47.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.4e-26 122.1 135 52.6
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 9.7e-26 120.9 124 54.0
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 9.7e-26 120.9 80 75.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.7e-25 120.2 171 45.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 2.8e-25 119.4 182 48.4
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.7e-25 119.0 127 53.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.7e-25 119.0 128 52.3
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 4.8e-25 118.6 175 46.9
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 8.2e-25 117.9 159 48.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.4e-24 117.1 172 44.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.8e-24 116.7 182 45.6
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.1e-24 115.5 179 46.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.1e-24 115.5 101 61.4
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 7.0e-24 114.8 78 69.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.6e-23 113.6 151 46.4
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.0e-23 113.2 86 66.3
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.6e-23 112.8 86 65.1
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 5.9e-23 111.7 81 71.6
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 7.7e-23 111.3 233 36.9
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.3e-22 110.5 92 64.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.5e-21 106.3 208 39.9
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 3.2e-21 105.9 77 68.8
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 6.1e-20 101.7 157 42.7
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 8.0e-20 101.3 93 57.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.8e-19 98.2 86 55.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.8e-19 97.8 83 56.6
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.2e-18 97.4 72 65.3
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.5e-18 97.1 77 63.6
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.3e-17 94.0 85 55.3
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-15 87.4 100 50.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.9e-13 80.1 65 64.6
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.6e-12 77.0 85 40.0
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.7e-12 76.3 59 69.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 3.0e-11 72.8 146 37.7
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 3.0e-11 72.8 44 84.1
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 2.6e-10 69.7 100 42.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 4.4e-10 68.9 57 63.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.8e-09 66.2 97 43.3
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.1e-08 64.3 87 40.2
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 4.5e-07 58.9 133 36.8
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.5e-07 58.9 133 30.1
TPR.G33054 Trifolium pratense HOM05D005889 ORTHO05D007495 2.3e-06 56.6 43 60.5
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.0e-06 55.5 85 45.9


User provided reference genes

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