Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018149 Lotus japonicus HOM05D000078 ORTHO05D000025 1.4e-58 229.6 125 100.0
arahy.Tifrunner.gnm1.ann1.VJ8B3Q Arachis hypogaea HOM05D000078 ORTHO05D000025 3.7e-24 115.2 172 47.1
Medtr5g016750 Medicago truncatula HOM05D000078 ORTHO05D000025 7.0e-23 110.9 186 45.7
arahy.Tifrunner.gnm1.ann1.47NS3A Arachis hypogaea HOM05D000078 ORTHO05D000025 5.0e-21 104.8 172 44.8
Lalb_Chr09g0323311 Lupinus albus HOM05D000078 ORTHO05D000025 7.3e-20 100.9 176 44.3
Phvul.002G016700 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 2.1e-19 99.4 164 47.6
Lalb_Chr16g0378631 Lupinus albus HOM05D000078 ORTHO05D000025 8.9e-18 94.0 171 42.1
Glyma.11G053600 Glycine max HOM05D000078 ORTHO05D000025 3.4e-17 92.0 183 43.2
VMungo1103G0001 Vigna mungo HOM05D000078 ORTHO05D000025 1.3e-16 90.1 164 42.7
TPR.G26859 Trifolium pratense HOM05D000078 ORTHO05D000025 4.9e-16 88.2 174 45.4
Lalb_Chr05g0213381 Lupinus albus HOM05D000078 ORTHO05D000025 1.1e-15 87.0 181 39.8
Glyma.01G188600 Glycine max HOM05D000078 ORTHO05D000025 4.1e-15 85.1 156 47.4
Glyma.17G169800 Glycine max HOM05D000078 ORTHO05D000025 9.2e-15 84.0 166 41.0
Ca_24750_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 4.6e-14 81.6 98 56.1
ClCG01G016940 Citrullus lanatus HOM05D000078 ORTHO05D000025 3.9e-13 78.6 161 37.9
Duzib147G0692 Durio zibethinus HOM05D000078 ORTHO05D000025 3.9e-13 78.6 155 38.1
CsaV3_6G043400 Cucumis sativus L. HOM05D000078 ORTHO05D000025 1.1e-12 77.0 143 38.5
Phvul.003G241700 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.1e-12 77.0 168 38.7
Gorai.008G077900 Gossypium raimondii HOM05D000078 ORTHO05D000025 1.9e-12 76.3 154 37.7
Ciclev10026687m.g Citrus clementina HOM05D000078 ORTHO05D000025 2.5e-12 75.9 154 38.3
Gohir.A12G073100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.5e-12 75.9 162 38.3
Gohir.D12G070900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.5e-12 75.9 162 38.3
Glyma.05G092800 Glycine max HOM05D000078 ORTHO05D000025 3.3e-12 75.5 167 38.9
CiPaw.03G185100 Carya illinoinensis HOM05D000078 ORTHO05D000025 4.3e-12 75.1 145 37.9
MELO3C007573.2 Cucumis melo HOM05D000078 ORTHO05D000025 7.3e-12 74.3 143 37.8
Prupe.6G231500 Prunus persica HOM05D000078 ORTHO05D000025 7.3e-12 74.3 172 35.5
Duzib264G0033 Durio zibethinus HOM05D000078 ORTHO05D000025 2.8e-11 72.4 156 35.9
THA.LOC104819854 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 2.8e-11 72.4 168 33.3
Ah.02g126010 Amaranthus hybridus HOM05D000078 ORTHO05D000025 4.7e-11 71.6 147 39.5
VMungo0251G1719 Vigna mungo HOM05D000078 ORTHO05D000025 4.7e-11 71.6 166 38.0
Haze_13329 Corylus avellana HOM05D000078 ORTHO05D000025 6.2e-11 71.2 161 36.0
Atru.chr3.280 Acer truncatum HOM05D000078 ORTHO05D000025 8.1e-11 70.9 157 36.9
RcHm_v2.0_Chr2g0106241 Rosa chinensis HOM05D000078 ORTHO05D000025 1.8e-10 69.7 167 33.5
Gohir.D03G024500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.3e-10 69.3 155 36.1
Sed0022243 Sechium edule HOM05D000078 ORTHO05D000025 3.1e-10 68.9 159 36.5
TWI09G0950 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 3.1e-10 68.9 170 35.3
QL06p040548 Quercus lobata HOM05D000078 ORTHO05D000025 5.2e-10 68.2 178 36.5
Actinidia36471 Actinidia chinensis HOM05D000078 ORTHO05D000025 6.8e-10 67.8 159 35.8
Duzib187G0078 Durio zibethinus HOM05D000078 ORTHO05D000025 6.8e-10 67.8 172 34.3
Aa31LG1G15720 Aethionema arabicum HOM05D000078 ORTHO05D000025 8.9e-10 67.4 160 37.5
CiPaw.04G131200 Carya illinoinensis HOM05D000078 ORTHO05D000025 8.9e-10 67.4 167 35.9
Thhalv10004985m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 8.9e-10 67.4 168 36.3
Gorai.003G026100 Gossypium raimondii HOM05D000078 ORTHO05D000025 8.9e-10 67.4 156 35.3
TAR628G1625 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.2e-09 67.0 144 34.7
Gohir.A02G156100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.5e-09 66.6 162 34.6
Carub.0008s2732 Capsella rubella HOM05D000078 ORTHO05D000025 2.0e-09 66.2 161 35.4
CSS0028041 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 2.6e-09 65.9 162 36.4
Cc07_g06220 Coffea canephora HOM05D000078 ORTHO05D000025 2.6e-09 65.9 167 34.7
MD15G1286600 Malus domestica HOM05D000078 ORTHO05D000025 2.6e-09 65.9 144 36.1
TWI73G0851 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.6e-09 65.9 170 34.7
MD02G1176200 Malus domestica HOM05D000078 ORTHO05D000025 3.4e-09 65.5 164 36.0
BcaC06g34799 Brassica carinata HOM05D000078 ORTHO05D000025 4.4e-09 65.1 186 34.4
C07p24540 Brassica napus HOM05D000078 ORTHO05D000025 4.4e-09 65.1 186 34.4
BolC7t42974H Brassica oleracea HOM05D000078 ORTHO05D000025 4.4e-09 65.1 186 34.4
Dinv26847 Davidia involucrata HOM05D000078 ORTHO05D000025 4.4e-09 65.1 164 34.8
Rhsim06G0053100 Rhododendron simsii HOM05D000078 ORTHO05D000025 4.4e-09 65.1 147 36.7
CDE01G0440 Ceratophyllum demersum HOM05D000078 ORTHO05D000025 5.8e-09 64.7 123 38.2
BcaB02g09938 Brassica carinata HOM05D000078 ORTHO05D000025 7.5e-09 64.3 173 34.7
BcaB06g27891 Brassica carinata HOM05D000078 ORTHO05D000025 7.5e-09 64.3 146 37.7
Cfa014704 Carpinus fangiana HOM05D000078 ORTHO05D000025 7.5e-09 64.3 100 47.0
Potri.005G140900 Populus trichocarpa HOM05D000078 ORTHO05D000025 7.5e-09 64.3 166 36.7
Rhsim10G0113900 Rhododendron simsii HOM05D000078 ORTHO05D000025 7.5e-09 64.3 171 34.5
Sabra05G0110400 Salix brachista HOM05D000078 ORTHO05D000025 7.5e-09 64.3 163 33.1
Aa31LG6G14080 Aethionema arabicum HOM05D000078 ORTHO05D000025 9.9e-09 63.9 157 33.8
A07p16780 Brassica napus HOM05D000078 ORTHO05D000025 9.9e-09 63.9 190 34.7
BraA07t29403Z Brassica rapa HOM05D000078 ORTHO05D000025 9.9e-09 63.9 190 34.7
Thecc.01G060800 Theobroma cacao HOM05D000078 ORTHO05D000025 9.9e-09 63.9 173 33.5
Sed0002958 Sechium edule HOM05D000078 ORTHO05D000025 1.3e-08 63.5 161 36.0
CSS0025546 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.7e-08 63.2 144 36.1
CSS0040791 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.7e-08 63.2 144 36.1
GSVIVG01022076001 Vitis vinifera HOM05D000078 ORTHO05D000025 2.2e-08 62.8 146 35.6
CAN.G370.34 Capsicum annuum HOM05D000078 ORTHO05D000025 2.9e-08 62.4 166 36.1
BcaC02g08551 Brassica carinata HOM05D000078 ORTHO05D000025 3.7e-08 62.0 146 34.2
A09p09500 Brassica napus HOM05D000078 ORTHO05D000025 3.7e-08 62.0 160 37.5
C04p52680 Brassica napus HOM05D000078 ORTHO05D000025 3.7e-08 62.0 146 34.2
BolC4t26833H Brassica oleracea HOM05D000078 ORTHO05D000025 3.7e-08 62.0 146 34.2
Manes.13G120400 Manihot esculenta HOM05D000078 ORTHO05D000025 3.7e-08 62.0 185 36.8
CANSAT01G0832 Cannabis sativa HOM05D000078 ORTHO05D000025 4.9e-08 61.6 163 35.6
Dinv30015 Davidia involucrata HOM05D000078 ORTHO05D000025 4.9e-08 61.6 161 34.8
Migut.C00546 Erythranthe guttata HOM05D000078 ORTHO05D000025 4.9e-08 61.6 145 33.8
Rhsim07G0226000 Rhododendron simsii HOM05D000078 ORTHO05D000025 4.9e-08 61.6 145 34.5
C09p11230 Brassica napus HOM05D000078 ORTHO05D000025 6.4e-08 61.2 159 34.6
BolC9t54013H Brassica oleracea HOM05D000078 ORTHO05D000025 6.4e-08 61.2 159 34.6
HanXRQChr10g0310581 Helianthus annuus HOM05D000078 ORTHO05D000025 6.4e-08 61.2 142 36.6
BcaB04g20071 Brassica carinata HOM05D000078 ORTHO05D000025 8.3e-08 60.8 166 35.5
A04p17820 Brassica napus HOM05D000078 ORTHO05D000025 8.3e-08 60.8 146 33.6
BraA04t17401Z Brassica rapa HOM05D000078 ORTHO05D000025 8.3e-08 60.8 146 33.6
BraA09t36598Z Brassica rapa HOM05D000078 ORTHO05D000025 8.3e-08 60.8 159 35.2
FvH4_1g16370 Fragaria vesca HOM05D000078 ORTHO05D000025 1.1e-07 60.5 149 34.9
Atru.chr13.731 Acer truncatum HOM05D000078 ORTHO05D000025 1.4e-07 60.1 142 36.6
AT5G67190 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.4e-07 60.1 184 33.2
MSTRG.3436 Avicennia marina HOM05D000078 ORTHO05D000025 1.4e-07 60.1 158 34.2
BcaC04g23195 Brassica carinata HOM05D000078 ORTHO05D000025 1.4e-07 60.1 159 34.6
CARHR280440 Cardamine hirsuta HOM05D000078 ORTHO05D000025 1.4e-07 60.1 182 34.1
Migut.N02735 Erythranthe guttata HOM05D000078 ORTHO05D000025 1.4e-07 60.1 144 33.3
FAN28G2125 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.4e-07 60.1 149 34.2
Sabra07G0041500 Salix brachista HOM05D000078 ORTHO05D000025 1.4e-07 60.1 159 35.8
AL8G44150 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 1.9e-07 59.7 186 32.8
MSTRG.25074 Avicennia marina HOM05D000078 ORTHO05D000025 1.9e-07 59.7 145 33.1
CiPaw.15G053900 Carya illinoinensis HOM05D000078 ORTHO05D000025 2.4e-07 59.3 146 34.2
MSTRG.24350 Avicennia marina HOM05D000078 ORTHO05D000025 3.2e-07 58.9 144 33.3
Cc10_g04710 Coffea canephora HOM05D000078 ORTHO05D000025 3.2e-07 58.9 142 33.1
FAN19G1117 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.2e-07 58.9 149 34.2
Nitab4.5_0001603g0050 Nicotiana tabacum HOM05D000078 ORTHO05D000025 3.2e-07 58.9 141 35.5
MSTRG.15378 Avicennia marina HOM05D000078 ORTHO05D000025 4.1e-07 58.5 140 35.0
Manes.05G175800 Manihot esculenta HOM05D000078 ORTHO05D000025 4.1e-07 58.5 142 35.2
Nitab4.5_0000290g0040 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.1e-07 58.5 173 32.9
Nitab4.5_0000929g0090 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.1e-07 58.5 149 34.2
Potri.002G124000 Populus trichocarpa HOM05D000078 ORTHO05D000025 4.1e-07 58.5 136 35.3
Sabra02G0097300 Salix brachista HOM05D000078 ORTHO05D000025 4.1e-07 58.5 142 35.2
Sed0013453 Sechium edule HOM05D000078 ORTHO05D000025 4.1e-07 58.5 142 33.8
PGSC0003DMG400004005 Solanum tuberosum HOM05D000078 ORTHO05D000025 4.1e-07 58.5 168 34.5
Actinidia22649 Actinidia chinensis HOM05D000078 ORTHO05D000025 5.4e-07 58.2 76 46.1
BcaNung02044 Brassica carinata HOM05D000078 ORTHO05D000025 5.4e-07 58.2 168 31.5
C07p62290 Brassica napus HOM05D000078 ORTHO05D000025 5.4e-07 58.2 168 31.5
BolC7t46645H Brassica oleracea HOM05D000078 ORTHO05D000025 5.4e-07 58.2 168 31.5
Cfa018061 Carpinus fangiana HOM05D000078 ORTHO05D000025 5.4e-07 58.2 144 34.7
HanXRQChr09g0267201 Helianthus annuus HOM05D000078 ORTHO05D000025 5.4e-07 58.2 143 33.6
Lj4C62T9 Lonicera japonica HOM05D000078 ORTHO05D000025 5.4e-07 58.2 143 32.9
Nitab4.5_0000287g0030 Nicotiana tabacum HOM05D000078 ORTHO05D000025 5.4e-07 58.2 143 35.0
Sopen02g037700 Solanum pennellii HOM05D000078 ORTHO05D000025 5.4e-07 58.2 168 34.5
CiPaw.16G039900 Carya illinoinensis HOM05D000078 ORTHO05D000025 7.1e-07 57.8 144 34.7
MELO3C020847.2 Cucumis melo HOM05D000078 ORTHO05D000025 7.1e-07 57.8 74 43.2
HanXRQChr15g0473661 Helianthus annuus HOM05D000078 ORTHO05D000025 7.1e-07 57.8 146 34.2
Lsat_1_v5_gn_3_89921 Lactuca sativa HOM05D000078 ORTHO05D000025 7.1e-07 57.8 146 36.3
Sp2g29480 Schrenkiella parvula HOM05D000078 ORTHO05D000025 7.1e-07 57.8 107 43.0
PGSC0003DMG400007951 Solanum tuberosum HOM05D000078 ORTHO05D000025 7.1e-07 57.8 142 36.6
Carub.0004s0254 Capsella rubella HOM05D000078 ORTHO05D000025 9.2e-07 57.4 146 34.2
Haze_18047 Corylus avellana HOM05D000078 ORTHO05D000025 9.2e-07 57.4 144 34.7
Hma1.2p1_0634F.1_g193110 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 9.2e-07 57.4 143 39.2
MD15G1078900 Malus domestica HOM05D000078 ORTHO05D000025 9.2e-07 57.4 144 33.3
Prupe.1G432000 Prunus persica HOM05D000078 ORTHO05D000025 9.2e-07 57.4 144 32.6
MSTRG.22242 Avicennia marina HOM05D000078 ORTHO05D000025 1.2e-06 57.0 144 31.9
FAN23G0702 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.2e-06 57.0 161 34.2
PGR004G2688 Punica granatum HOM05D000078 ORTHO05D000025 1.2e-06 57.0 156 33.3
unitig_32.g10768 Utricularia gibba HOM05D000078 ORTHO05D000025 1.2e-06 57.0 153 34.0
A03p64990 Brassica napus HOM05D000078 ORTHO05D000025 1.6e-06 56.6 166 29.5
BraA03t15558Z Brassica rapa HOM05D000078 ORTHO05D000025 1.6e-06 56.6 166 29.5
CAN.G1030.30 Capsicum annuum HOM05D000078 ORTHO05D000025 1.6e-06 56.6 141 34.0
MD08G1096000 Malus domestica HOM05D000078 ORTHO05D000025 1.6e-06 56.6 144 33.3
BraA01t00167Z Brassica rapa HOM05D000078 ORTHO05D000025 2.1e-06 56.2 169 29.6
Sp5g11910 Schrenkiella parvula HOM05D000078 ORTHO05D000025 2.1e-06 56.2 77 46.8
THA.LOC104821249 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 2.1e-06 56.2 179 31.3
BcaNung02526 Brassica carinata HOM05D000078 ORTHO05D000025 2.7e-06 55.8 167 29.9
FAN26G1443 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.7e-06 55.8 146 32.9
PSO170G4932 Papaver somniferum HOM05D000078 ORTHO05D000025 2.7e-06 55.8 148 31.1
QL02p004228 Quercus lobata HOM05D000078 ORTHO05D000025 2.7e-06 55.8 146 33.6
Sp4g02330 Schrenkiella parvula HOM05D000078 ORTHO05D000025 2.7e-06 55.8 153 34.0
Ciclev10002733m.g Citrus clementina HOM05D000078 ORTHO05D000025 3.5e-06 55.5 142 40.1
Nitab4.5_0005129g0040 Nicotiana tabacum HOM05D000078 ORTHO05D000025 3.5e-06 55.5 143 32.9
Solyc04g078640.3 Solanum lycopersicum HOM05D000078 ORTHO05D000025 3.5e-06 55.5 142 33.8
A01p01750 Brassica napus HOM05D000078 ORTHO05D000025 4.6e-06 55.1 171 29.2
CANSAT25G0233 Cannabis sativa HOM05D000078 ORTHO05D000025 4.6e-06 55.1 144 31.2
Lsat_1_v5_gn_4_127080 Lactuca sativa HOM05D000078 ORTHO05D000025 4.6e-06 55.1 167 32.3
Oeu037623.1 Olea europaea HOM05D000078 ORTHO05D000025 4.6e-06 55.1 142 32.4
Peaxi162Scf00365g00043 Petunia axillaris HOM05D000078 ORTHO05D000025 4.6e-06 55.1 149 33.6
Sopen04g032240 Solanum pennellii HOM05D000078 ORTHO05D000025 4.6e-06 55.1 142 33.1
THA.LOC104807596 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 4.6e-06 55.1 95 41.1
Eucgr.F00192 Eucalyptus grandis HOM05D000078 ORTHO05D000025 6.0e-06 54.7 142 35.2
PSO210G5371 Papaver somniferum HOM05D000078 ORTHO05D000025 6.0e-06 54.7 148 30.4
Ah.03g145670 Amaranthus hybridus HOM05D000078 ORTHO05D000025 7.8e-06 54.3 149 34.2
ECA238G2463 Erigeron canadensis HOM05D000078 ORTHO05D000025 7.8e-06 54.3 143 32.2
HanXRQChr04g0103371 Helianthus annuus HOM05D000078 ORTHO05D000025 7.8e-06 54.3 144 32.6
Lj4P154T9 Lonicera japonica HOM05D000078 ORTHO05D000025 7.8e-06 54.3 85 50.6
SalBow6G3022 Salvia bowleyana HOM05D000078 ORTHO05D000025 7.8e-06 54.3 72 48.6
SalBow6G3405 Salvia bowleyana HOM05D000078 ORTHO05D000025 7.8e-06 54.3 72 48.6


User provided reference genes

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