Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018070 Lotus japonicus HOM05D015699 ORTHO05D013665 2.2e-266 921.8 487 100.0
Lj2g0021776 Lotus japonicus HOM05D000451 ORTHO05D013665 1.9e-52 211.1 439 35.3
AL7G46810 Arabidopsis lyrata HOM05D000011 ORTHO05D013665 1.4e-42 178.3 257 40.9
AL7G46800 Arabidopsis lyrata HOM05D015699 ORTHO05D013665 1.2e-41 175.3 241 42.3
A02p26940 Brassica napus HOM05D001292 ORTHO05D001202 1.0e-32 145.6 204 42.6
BraA02t07708Z Brassica rapa HOM05D015699 ORTHO05D013665 1.0e-32 145.6 204 42.6
MD10G1009900 Malus domestica HOM05D000176 ORTHO05D000106 2.4e-26 124.4 254 31.5
Lj2g0024122 Lotus japonicus HOM05D015699 ORTHO05D013665 3.1e-26 124.0 417 28.3
TPR.G34910 Trifolium pratense HOM05D015947 ORTHO05D013665 1.6e-25 121.7 200 36.5
Thhalv10012247m.g Eutrema salsugineum HOM05D015699 ORTHO05D013665 8.0e-22 109.4 116 44.0
TWI09G0140 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.4e-21 108.6 302 29.1
Psat4g056600 Pisum sativum HOM05D015947 ORTHO05D013665 1.2e-20 105.5 151 41.1
TPR.G25800 Trifolium pratense HOM05D015699 ORTHO05D013665 3.3e-20 104.0 245 31.4
Prupe.8G014000 Prunus persica HOM05D000176 ORTHO05D000106 9.7e-20 102.4 240 28.8
Psat5g290160 Pisum sativum HOM05D015947 ORTHO05D018089 1.8e-18 98.2 198 33.3
Lj4g0006003 Lotus japonicus HOM05D000451 ORTHO05D000351 5.0e-16 90.1 268 31.3
FvH4_4g28291 Fragaria vesca HOM05D000176 ORTHO05D000106 1.4e-13 82.0 246 25.6
arahy.Tifrunner.gnm1.ann1.1V6YN4 Arachis hypogaea HOM05D000176 ORTHO05D000106 1.8e-13 81.6 202 30.7
FAN14G5492 Fragaria x ananassa HOM05D011609 ORTHO05D000106 9.8e-12 75.9 197 26.9
Zm00001eb373420 Zea mays HOM05D000176 ORTHO05D000106 6.3e-11 73.2 215 26.0
arahy.Tifrunner.gnm1.ann1.YWU82N Arachis hypogaea HOM05D000176 ORTHO05D000106 1.1e-10 72.4 198 28.3
TWI63G1793 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.1e-10 72.4 130 36.2
arahy.Tifrunner.gnm1.ann1.45P48G Arachis hypogaea HOM05D000176 ORTHO05D000106 1.8e-10 71.6 204 28.4
arahy.Tifrunner.gnm1.ann1.PKR2V8 Arachis hypogaea HOM05D000176 ORTHO05D000106 4.1e-10 70.5 242 26.4
Os01g0531200 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 5.4e-10 70.1 269 24.5
Os01g0738500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 5.4e-10 70.1 269 24.5
Os07g0507500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 5.4e-10 70.1 213 26.8
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 9.1e-10 69.3 287 24.7
Os02g0592600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 1.2e-09 68.9 269 24.2
A02p26910 Brassica napus HOM05D015699 ORTHO05D013665 1.6e-09 68.6 195 31.3
BraA02t07705Z Brassica rapa HOM05D015699 ORTHO05D013665 1.6e-09 68.6 195 31.3
AT2G05350 Arabidopsis thaliana HOM05D029468 ORTHO05D021456 3.5e-09 67.4 104 33.7
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.7e-09 66.2 214 29.4
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 7.7e-09 66.2 277 24.5
MD13G1054400 Malus domestica HOM05D000115 ORTHO05D003511 1.3e-08 65.5 241 27.0
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-08 65.1 218 29.4
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.3e-08 64.7 220 29.5
FAN18G1933 Fragaria x ananassa HOM05D041032 ORTHO05D046484 2.3e-08 64.7 174 27.0
Atru.chr12.1157 Acer truncatum HOM05D000176 ORTHO05D000106 2.9e-08 64.3 190 26.8
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.9e-08 64.3 218 29.4
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.9e-08 64.3 218 29.4
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.5e-08 63.2 216 28.2
Lju361A13T18 Lonicera japonica HOM05D041032 ORTHO05D000106 6.5e-08 63.2 116 37.1
arahy.Tifrunner.gnm1.ann1.H2QZUK Arachis hypogaea HOM05D000176 ORTHO05D000106 8.6e-08 62.8 189 29.1
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 8.6e-08 62.8 277 25.3
Psat4g056520 Pisum sativum HOM05D015947 ORTHO05D021456 8.6e-08 62.8 118 36.4
TWI31G0542 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.5e-07 62.0 194 28.4
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 1.9e-07 61.6 217 26.7
FvH4_5g29581 Fragaria vesca HOM05D041032 ORTHO05D046484 2.5e-07 61.2 175 25.1
Peaxi162Scf00691g00622 Petunia axillaris HOM05D000176 ORTHO05D000106 2.5e-07 61.2 232 26.7
Lj4g0008099 Lotus japonicus HOM05D000176 ORTHO05D000106 3.3e-07 60.8 195 26.2
TWI56G0332 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.2e-07 60.5 194 27.8
TWI75G1856 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.2e-07 60.5 194 27.8
TWI79G1140 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.2e-07 60.5 195 26.2
Peaxi162Scf00803g00017 Petunia axillaris HOM05D000176 ORTHO05D000106 5.5e-07 60.1 232 26.3
COL.COLO4_29177 Corchorus olitorius HOM05D017396 ORTHO05D025145 1.2e-06 58.9 121 32.2
TWI38G1670 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.2e-06 58.9 197 25.4
FAN14G4430 Fragaria x ananassa HOM05D011609 ORTHO05D000106 1.6e-06 58.5 197 24.9
Hma1.2p1_0244F.1_g101050 Hydrangea macrophylla HOM05D011609 ORTHO05D000106 1.6e-06 58.5 79 39.2
Lj4C623T1 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-06 57.8 82 40.2
Peaxi162Scf00351g00224 Petunia axillaris HOM05D000176 ORTHO05D000106 6.1e-06 56.6 240 26.2
TWI31G0719 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.1e-06 56.6 201 26.9


User provided reference genes

Program Settings