Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 0.0e+00 1441.4 704 100.0
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 0.0e+00 1182.5 707 82.0
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 0.0e+00 1179.1 707 81.3
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 0.0e+00 1169.5 724 80.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 0.0e+00 1166.4 707 81.5
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 0.0e+00 1129.8 703 78.0
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.6e-310 1068.9 693 75.6
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.1e-306 1053.5 693 74.7
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 3.7e-302 1041.2 681 73.0
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 5.5e-290 1000.7 671 71.2
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 8.7e-288 993.4 671 69.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 7.4e-287 990.3 582 77.7
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 4.8e-286 987.6 671 70.0
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 2.4e-285 985.3 613 73.9
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.2e-284 983.0 654 72.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 7.6e-284 980.3 705 68.1
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 3.8e-283 978.0 629 72.3
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 3.2e-282 974.9 698 68.6
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 4.6e-281 971.1 680 69.6
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 6.1e-281 970.7 769 64.2
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 6.7e-280 967.2 667 70.0
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 8.8e-280 966.8 707 65.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 1.9e-279 965.7 691 67.6
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 6.9e-277 957.2 676 68.2
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 9.1e-277 956.8 707 66.9
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 1.5e-276 956.1 737 65.7
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 2.9e-275 951.8 506 89.3
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.6e-273 946.0 642 70.4
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 2.1e-273 945.7 697 66.7
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 6.7e-272 940.6 506 88.3
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.0e-271 939.1 664 68.8
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 9.7e-271 936.8 642 69.5
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.4e-269 932.2 647 69.1
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 2.4e-269 932.2 597 72.5
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.5e-268 929.5 592 74.5
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 3.4e-268 928.3 683 66.2
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.9e-267 925.2 589 72.2
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 2.9e-267 925.2 751 61.7
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 6.5e-267 924.1 575 74.4
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 6.5e-267 924.1 647 68.9
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.9e-266 922.5 629 69.2
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.6e-265 919.5 619 70.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 2.1e-265 919.1 743 61.0
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 6.1e-265 917.5 646 68.0
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.4e-264 916.4 671 66.6
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 2.3e-264 915.6 581 72.8
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.5e-263 912.9 482 89.8
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 2.6e-263 912.1 662 66.6
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 4.8e-262 907.9 651 67.4
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 7.7e-260 900.6 587 71.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 2.9e-259 898.7 769 59.3
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 1.6e-257 892.9 610 69.0
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 6.1e-257 891.0 614 68.4
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 2.0e-255 885.9 590 70.8
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.7e-254 881.7 711 61.6
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.1e-253 878.2 596 68.1
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 3.5e-252 875.2 584 70.9
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.7e-251 872.8 509 78.2
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.2e-250 868.6 590 69.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 5.5e-250 867.8 573 70.9
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 5.5e-250 867.8 600 70.2
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 5.5e-250 867.8 576 71.9
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 5.5e-250 867.8 766 58.4
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 4.7e-249 864.8 668 66.5
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 1.8e-248 862.8 677 62.6
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 2.6e-247 859.0 972 49.0
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 9.8e-247 857.1 658 64.1
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 1.2e-244 850.1 538 72.3
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.7e-244 849.0 697 61.0
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 4.5e-244 848.2 761 58.1
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 3.8e-243 845.1 663 63.5
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 3.6e-241 838.6 540 73.3
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.3e-240 835.9 669 62.5
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.1e-237 827.0 569 69.9
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-232 810.1 671 61.1
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 7.5e-231 804.3 702 63.7
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 4.1e-221 771.9 477 74.8
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 2.7e-220 769.2 736 55.6
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 5.1e-219 765.0 510 72.5
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.0e-215 753.1 510 68.2
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.7e-214 750.0 671 57.5
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 4.6e-212 741.9 538 66.5
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 4.6e-212 741.9 388 91.5
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 8.4e-206 721.1 509 69.2
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.1e-205 720.7 516 66.9
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.9e-203 712.2 575 63.0
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 7.3e-202 708.0 516 65.1
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.9e-198 696.0 566 59.4
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 5.6e-194 681.8 674 53.9
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.6e-191 671.4 576 58.7
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.7e-188 662.9 459 67.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.9e-186 656.8 497 66.6
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.9e-184 648.3 438 69.2
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 6.7e-179 631.7 718 50.6
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.6e-169 600.5 393 71.8
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.3e-152 542.3 325 78.8
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 9.1e-152 541.6 648 48.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 7.0e-136 488.8 367 63.2
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.6e-135 487.6 253 91.3
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 3.6e-132 476.5 648 42.9
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 4.6e-111 406.4 323 64.4
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.6e-106 390.6 311 63.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.1e-88 332.0 209 73.7
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 7.6e-82 309.3 201 74.1
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 6.4e-81 306.2 297 54.2
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.1e-77 295.4 264 60.6
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.3e-72 275.8 692 30.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 4.6e-71 273.5 306 48.4
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 3.1e-67 260.8 257 52.1
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.6e-63 246.9 245 52.7
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 2.5e-45 188.0 91 92.3
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.8e-44 184.5 164 62.2
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 4.1e-43 180.6 115 76.5
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 5.3e-43 180.3 206 46.6
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 1.2e-42 179.1 228 44.3
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 3.8e-41 174.1 103 87.4
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.7e-39 167.2 109 76.1
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.3e-38 164.9 122 67.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.4e-37 159.8 482 25.1
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 8.2e-36 156.4 121 57.9
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 9.1e-35 152.9 640 24.7
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 2.0e-34 151.8 496 25.2
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.9e-32 145.2 163 51.5
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 4.0e-30 137.5 322 28.0
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.5e-29 135.6 78 85.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.3e-28 132.5 613 23.2
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.5e-25 120.2 147 44.9
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 7.2e-24 116.7 192 41.1
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 8.0e-23 113.2 184 36.4
AagrBONN_evm.TU.Sc2ySwM_368.2662 Anthoceros agrestis HOM05D005348 ORTHO05D006635 8.8e-22 109.8 573 22.0
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.3e-20 103.6 59 81.4
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 5.9e-18 97.1 132 42.4
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-17 95.5 71 70.4
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 5.7e-13 80.5 63 60.3


User provided reference genes

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