Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.1e-110 401.7 197 100.0
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 6.4e-63 244.6 210 66.2
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 7.8e-61 237.7 210 62.9
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.1e-53 213.0 214 59.8
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.8e-52 209.9 215 62.8
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 3.9e-52 208.8 215 62.8
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.4e-49 199.5 216 61.1
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.2e-48 197.2 164 67.7
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 2.0e-48 196.4 211 61.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.4e-47 191.0 211 61.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.2e-45 187.2 208 58.7
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.6e-45 186.8 212 58.5
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.0e-44 184.1 164 65.9
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.1e-43 180.6 206 56.3
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.3e-42 177.2 198 52.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.6e-40 169.5 215 52.1
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.2e-39 166.4 213 52.1
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.1e-38 164.1 211 53.1
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.6e-37 158.7 217 49.8
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.4e-35 151.4 215 47.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 9.7e-35 151.0 212 49.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.0e-31 141.0 213 46.9
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.0e-31 141.0 206 47.6
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.2e-31 139.8 216 47.2
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.9e-30 136.7 201 50.7
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 3.2e-30 136.0 210 45.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 5.5e-30 135.2 219 47.5
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 6.1e-29 131.7 227 45.8
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 7.9e-29 131.3 220 45.5
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.0e-28 131.0 212 46.2
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.0e-28 131.0 213 46.5
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.8e-28 130.2 209 46.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.3e-27 125.9 205 46.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.7e-27 125.2 220 41.8
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 7.4e-27 124.8 210 42.4
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.2e-26 123.2 220 41.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.2e-26 123.2 215 41.4
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.8e-26 122.9 211 46.9
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 3.7e-26 122.5 207 44.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 2.4e-25 119.8 211 46.4
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 3.1e-25 119.4 212 43.4
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 9.1e-25 117.9 205 43.4
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-24 117.5 205 42.4
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-24 117.1 215 40.5
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.5e-24 117.1 223 41.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.5e-24 117.1 222 42.8
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 4.5e-24 115.5 216 42.1
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.5e-24 115.5 218 43.1
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.9e-24 115.2 206 40.8
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.3e-23 114.0 204 39.7
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-23 114.0 200 42.5
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.7e-23 113.6 231 39.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.1e-22 110.9 218 39.4
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.6e-21 105.9 207 41.1
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 6.1e-21 105.1 183 44.3
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.3e-20 103.2 212 38.2
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 2.3e-20 103.2 244 35.2
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.0e-20 102.8 189 43.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 3.0e-20 102.8 221 41.2
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 3.9e-20 102.4 202 40.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.9e-20 102.4 202 40.1
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.7e-20 101.7 203 40.9
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-19 100.5 141 48.9
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-19 100.5 141 48.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.5e-19 100.5 209 38.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.3e-19 99.4 200 39.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 9.7e-19 97.8 150 43.3
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.3e-18 97.4 204 39.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-18 97.4 211 39.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.8e-18 96.3 208 40.4
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.8e-18 96.3 201 38.3
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.8e-18 96.3 203 37.9
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.7e-18 95.9 211 37.0
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.7e-18 95.9 211 38.4
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.8e-18 95.5 131 47.3
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 6.3e-18 95.1 208 38.0
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 8.2e-18 94.7 209 37.8
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-17 94.4 213 35.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-17 94.4 209 37.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.4e-17 94.0 202 39.1
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-17 94.0 216 36.1
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-17 93.6 204 38.2
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.4e-17 93.2 115 52.2
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.4e-17 93.2 222 36.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.1e-17 92.8 203 39.4
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.0e-16 90.1 221 33.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.5e-16 89.4 235 33.6
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.5e-16 89.4 197 40.6
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.5e-16 89.0 151 42.4
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.5e-16 89.0 212 35.8
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 5.9e-16 88.6 190 37.9
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 7.7e-16 88.2 231 34.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.0e-15 87.8 150 41.3
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.0e-15 87.8 203 35.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-15 87.4 204 37.3
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.7e-15 87.0 212 36.3
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-15 86.7 151 40.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.2e-15 86.7 207 36.2
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.9e-15 86.3 163 41.7
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.8e-15 85.9 217 30.9
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 5.0e-15 85.5 184 34.8
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 5.0e-15 85.5 214 32.2
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 6.5e-15 85.1 196 37.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 6.5e-15 85.1 162 41.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.5e-15 85.1 113 46.9
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.1e-14 84.3 214 34.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-14 84.0 152 38.8
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.5e-14 84.0 152 38.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.5e-14 84.0 201 34.8
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-14 84.0 206 36.9
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-14 84.0 206 36.9
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 4.2e-14 82.4 113 45.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 4.2e-14 82.4 113 45.1
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 4.2e-14 82.4 113 45.1
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 4.2e-14 82.4 113 45.1
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 4.2e-14 82.4 200 37.5
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 4.2e-14 82.4 113 46.9
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.5e-14 82.0 124 49.2
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 5.5e-14 82.0 115 47.0
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.5e-14 82.0 210 34.3
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 9.4e-14 81.3 124 46.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.6e-13 80.5 115 50.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.1e-13 80.1 203 34.0
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 2.7e-13 79.7 113 44.2
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-13 79.3 114 45.6
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-13 79.3 114 45.6
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-13 79.3 114 45.6
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.6e-13 79.3 113 46.0
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 6.1e-13 78.6 136 43.4
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.0e-13 78.2 139 41.7
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.0e-13 78.2 200 35.5
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.0e-13 78.2 199 34.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.8e-12 77.0 197 31.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.8e-12 77.0 207 33.3
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.3e-12 76.6 199 37.2
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.3e-12 76.6 144 41.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.0e-12 76.3 117 42.7
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.9e-12 75.9 118 44.1
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.2e-12 75.5 115 44.3
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.2e-12 75.5 157 38.9
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.2e-12 75.5 157 38.9
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 6.7e-12 75.1 113 45.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 8.8e-12 74.7 117 43.6
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 8.8e-12 74.7 116 42.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.0e-11 73.6 128 42.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.6e-11 73.2 115 43.5
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.6e-11 73.2 145 42.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 5.7e-11 72.0 234 31.2
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 7.4e-11 71.6 184 34.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 7.4e-11 71.6 186 33.3
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 2.2e-10 70.1 119 41.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 8.2e-10 68.2 173 33.5
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.1e-09 67.8 124 37.1
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.4e-09 66.6 199 28.6
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.1e-09 66.2 45 66.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 4.1e-09 65.9 46 63.0
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.3e-09 65.5 206 31.6
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.6e-08 63.9 48 66.7
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.5e-08 62.8 138 36.2
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.7e-08 61.6 45 66.7
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.7e-07 60.5 234 31.2
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.7e-07 60.5 107 40.2
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.7e-07 60.5 46 60.9
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.2e-07 60.1 142 36.6
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.9e-07 59.7 185 31.9
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 6.5e-07 58.5 105 39.0
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.5e-06 57.4 225 28.9
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.5e-06 57.4 105 38.1
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 1.9e-06 57.0 38 73.7
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 4.2e-06 55.8 129 33.3
Zm00001eb050120 Zea mays HOM05D004032 ORTHO05D004462 5.5e-06 55.5 45 66.7


User provided reference genes

Program Settings