Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 3.4e-101 371.7 192 100.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 2.3e-65 252.7 204 69.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 6.7e-65 251.1 196 74.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.5e-64 250.0 194 73.2
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.6e-63 246.5 194 72.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.1e-62 242.3 197 73.1
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.7e-58 229.2 197 68.5
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 7.7e-53 211.1 197 65.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.5e-51 206.1 201 63.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 5.5e-51 204.9 200 61.5
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.4e-49 200.3 201 61.2
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.0e-48 196.4 208 62.0
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.3e-48 195.7 199 61.3
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.4e-48 195.3 199 59.3
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 9.7e-48 194.1 201 56.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.8e-47 192.6 200 61.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.7e-47 192.2 203 59.1
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 8.2e-47 191.0 204 62.3
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-46 189.9 202 59.9
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.0e-44 184.1 201 57.2
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 6.5e-44 181.4 204 57.4
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.5e-44 181.4 195 60.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 5.5e-43 178.3 199 56.3
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.2e-42 177.2 202 58.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.1e-42 176.4 210 58.1
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.4e-41 173.7 203 56.7
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-41 172.9 192 58.9
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 5.2e-41 171.8 210 56.7
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.6e-40 169.5 205 56.1
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.2e-39 164.5 224 51.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-38 164.1 204 53.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-38 164.1 204 53.9
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.1e-38 162.5 204 54.4
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.6e-37 160.2 201 55.2
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.5e-37 158.7 195 55.4
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 5.9e-37 158.3 226 50.4
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.9e-37 158.3 195 55.4
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 7.7e-37 157.9 213 50.2
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-36 157.5 217 51.6
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.2e-36 156.4 203 52.7
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-35 153.3 153 60.8
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.2e-35 152.1 199 54.3
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-33 147.5 210 52.4
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.0e-33 147.5 210 51.4
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.8e-33 146.7 205 48.8
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.3e-33 146.4 210 51.9
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.0e-33 145.6 211 50.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.5e-32 143.7 221 49.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.3e-32 142.5 212 49.1
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-32 142.5 197 53.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 3.3e-32 142.5 202 52.5
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-31 140.2 220 48.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-31 139.8 209 52.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.3e-31 138.3 211 48.3
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.3e-31 138.3 209 51.2
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.4e-30 137.1 197 50.3
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-30 136.7 186 53.8
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.8e-30 136.7 217 50.2
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.8e-30 136.7 202 48.0
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.4e-30 136.3 203 48.3
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.1e-30 135.6 180 51.1
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 4.1e-30 135.6 120 67.5
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.0e-29 133.3 213 51.2
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.7e-29 132.9 209 46.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.5e-29 132.5 206 50.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 5.9e-29 131.7 160 53.8
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.2e-28 129.8 207 47.3
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.9e-28 129.4 204 46.6
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.8e-28 129.0 203 48.3
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 8.5e-28 127.9 207 50.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-27 126.7 179 49.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.5e-27 126.3 213 47.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.5e-27 126.3 214 46.7
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 7.2e-27 124.8 164 53.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 3.6e-26 122.5 203 46.8
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.0e-25 120.9 213 43.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.8e-25 120.2 204 44.1
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.0e-25 119.4 204 46.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.6e-24 116.3 212 47.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.6e-24 116.3 137 56.9
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.6e-24 116.3 207 44.4
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 4.4e-24 115.5 206 43.2
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.7e-24 115.2 212 45.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 5.7e-24 115.2 212 44.3
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.7e-24 115.2 208 44.2
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.7e-24 115.2 146 52.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.7e-24 115.2 201 45.3
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 9.8e-24 114.4 204 46.1
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.3e-23 114.0 202 44.6
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.3e-23 114.0 211 45.5
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 2.8e-23 112.8 210 42.9
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.7e-23 112.5 202 43.6
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 6.3e-23 111.7 213 44.1
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.4e-22 110.5 170 48.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.4e-22 109.8 198 43.9
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.6e-21 107.1 204 44.1
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.7e-21 106.3 205 42.4
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 2.7e-21 106.3 208 43.3
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-21 106.3 200 41.0
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 7.7e-21 104.8 202 42.1
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 7.7e-21 104.8 202 42.1
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.0e-20 104.4 213 42.7
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-20 103.6 202 42.1
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.7e-20 103.6 202 43.1
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.3e-20 103.2 204 43.6
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.9e-20 102.8 205 41.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.8e-20 102.4 205 41.0
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 5.0e-20 102.1 205 41.0
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 5.0e-20 102.1 213 42.7
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-19 100.5 202 42.6
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-19 100.5 207 40.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-19 100.5 207 40.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-19 100.5 202 42.6
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.9e-19 100.1 208 43.3
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.5e-19 99.8 207 40.1
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.5e-19 99.8 205 40.0
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 7.2e-19 98.2 205 39.5
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.1e-18 96.7 189 42.3
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.1e-18 95.1 208 41.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.4e-17 94.0 196 38.8
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.3e-17 93.2 173 45.7
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.3e-17 93.2 204 45.1
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 4.0e-17 92.4 201 41.8
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-17 92.0 161 42.9
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-17 91.3 167 41.9
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-16 90.9 203 39.9
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.2e-16 90.9 207 40.1
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-16 90.5 186 39.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.5e-16 90.5 205 36.1
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 2.0e-16 90.1 165 47.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 5.7e-16 88.6 195 39.5
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 7.5e-16 88.2 197 39.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 9.8e-16 87.8 199 40.7
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.8e-15 86.3 179 43.6
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 3.7e-15 85.9 208 39.9
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.7e-15 85.9 191 39.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 4.9e-15 85.5 161 42.2
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 4.9e-15 85.5 195 38.5
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-14 84.3 202 41.1
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.1e-14 84.3 198 39.9
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.4e-14 84.0 164 39.0
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.1e-14 82.8 186 41.4
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.1e-14 82.8 202 37.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 4.1e-14 82.4 161 41.0
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 4.1e-14 82.4 133 47.4
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.0e-13 80.1 214 37.9
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.7e-13 79.7 197 38.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 3.5e-13 79.3 117 48.7
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.0e-12 77.8 200 35.0
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-12 77.8 165 38.8
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-12 77.8 165 38.8
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.9e-12 76.3 207 36.2
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.6e-12 75.1 163 37.4
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 6.6e-12 75.1 206 38.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.9e-11 73.6 205 37.6
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-11 72.8 142 43.0
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 3.3e-11 72.8 199 35.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 4.3e-11 72.4 132 44.7
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.3e-11 71.6 140 43.6
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.2e-10 70.9 141 40.4
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.2e-10 70.9 126 39.7
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 8.0e-10 68.2 108 51.9
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 8.0e-10 68.2 199 37.2
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.8e-09 67.0 203 34.0
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.8e-09 67.0 145 40.0
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 5.2e-09 65.5 101 49.5
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.0e-08 63.5 140 35.7
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 2.6e-08 63.2 206 34.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 3.4e-08 62.8 209 36.4
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 4.4e-08 62.4 200 35.0
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.3e-07 60.8 167 36.5
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.7e-07 60.5 59 59.3
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.7e-07 59.3 90 48.9
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.9e-07 58.9 119 41.2
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-06 57.8 38 71.1
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.4e-06 57.4 172 35.5
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 4.1e-06 55.8 107 44.9
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.4e-06 55.5 156 32.1
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.0e-06 55.1 120 42.5


User provided reference genes

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