Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.8e-57 225.7 113 100.0
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 3.5e-45 184.9 113 83.2
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 3.8e-44 181.4 113 82.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.2e-40 169.9 110 76.4
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.8e-39 164.5 111 75.7
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 4.2e-35 151.4 100 78.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 2.8e-34 148.7 113 69.9
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 5.7e-32 141.0 107 71.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.3e-31 139.8 109 69.7
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.4e-30 136.3 109 61.5
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.4e-30 135.6 111 62.2
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.4e-30 135.6 111 62.2
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 4.1e-30 134.8 111 58.6
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-29 133.3 116 60.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-29 133.3 116 60.3
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.6e-29 132.9 114 60.5
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.3e-28 129.8 100 67.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 1.7e-28 129.4 116 58.6
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-27 126.7 82 75.6
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.1e-27 126.7 112 56.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.1e-27 126.7 118 54.2
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.5e-27 126.3 112 56.2
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.5e-27 126.3 101 65.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.9e-27 125.9 115 56.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.5e-27 125.6 115 60.0
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.3e-27 125.2 112 56.2
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 3.3e-27 125.2 86 73.3
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 4.3e-27 124.8 77 75.3
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 7.3e-27 124.0 80 75.0
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-26 122.5 87 71.3
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.8e-26 122.1 83 67.5
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.8e-26 122.1 92 66.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.6e-26 121.7 114 55.3
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.6e-26 121.7 106 61.3
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 3.6e-26 121.7 88 68.2
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 6.1e-26 120.9 80 75.0
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.4e-25 119.8 75 76.0
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.0e-25 118.6 109 56.0
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 6.8e-25 117.5 93 63.4
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.8e-25 117.5 94 61.7
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 2.0e-24 115.9 77 71.4
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 5.7e-24 114.4 96 62.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 5.7e-24 114.4 91 61.5
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 2.2e-23 112.5 80 65.0
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 2.9e-23 112.1 77 66.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.9e-23 112.1 94 58.5
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 2.9e-23 112.1 88 60.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.9e-23 112.1 93 54.8
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.9e-23 112.1 87 64.4
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.4e-23 110.9 78 62.8
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 8.3e-23 110.5 92 57.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.1e-22 110.2 79 62.0
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.1e-22 110.2 88 64.8
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.1e-22 108.2 90 60.0
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.1e-22 108.2 77 64.9
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 5.4e-22 107.8 78 61.5
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 5.4e-22 107.8 104 54.8
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.2e-21 106.7 75 65.3
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.6e-21 106.3 83 59.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.6e-21 106.3 89 58.4
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.0e-21 105.9 90 57.8
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 4.6e-21 104.8 93 54.8
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 5.9e-21 104.4 112 51.8
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 7.8e-21 104.0 85 60.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.0e-20 103.6 83 56.6
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.3e-20 103.2 85 58.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.3e-20 102.4 79 60.8
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.0e-20 102.1 79 59.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 3.0e-20 102.1 86 60.5
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 5.0e-20 101.3 80 58.8
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.0e-20 101.3 91 57.1
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.6e-20 100.9 97 54.6
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 8.6e-20 100.5 70 67.1
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.9e-19 99.4 109 42.2
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 2.5e-19 99.0 71 60.6
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.5e-19 99.0 106 47.2
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.5e-19 99.0 82 58.5
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.5e-19 99.0 75 54.7
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.5e-19 99.0 70 67.1
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.5e-19 99.0 87 51.7
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 3.3e-19 98.6 88 51.1
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 3.3e-19 98.6 99 49.5
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 4.3e-19 98.2 80 56.2
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 4.3e-19 98.2 80 56.2
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 4.3e-19 98.2 75 62.7
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 5.6e-19 97.8 79 59.5
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 5.6e-19 97.8 80 53.8
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 7.3e-19 97.4 90 48.9
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.3e-19 97.4 84 59.5
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 7.3e-19 97.4 68 64.7
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 7.3e-19 97.4 87 54.0
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 7.3e-19 97.4 85 50.6
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 9.5e-19 97.1 81 55.6
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 2.8e-18 95.5 81 54.3
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 2.8e-18 95.5 74 59.5
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 3.6e-18 95.1 103 46.6
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.6e-18 95.1 97 52.6
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.6e-18 95.1 84 58.3
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 4.7e-18 94.7 73 68.5
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 6.2e-18 94.4 103 45.6
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 6.2e-18 94.4 77 55.8
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 6.2e-18 94.4 88 53.4
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 6.2e-18 94.4 72 59.7
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-17 93.6 106 43.4
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.1e-17 93.6 75 58.7
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.1e-17 93.6 73 57.5
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.4e-17 93.2 86 47.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.8e-17 92.8 103 45.6
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 2.3e-17 92.4 95 46.3
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.3e-17 92.4 103 44.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 2.3e-17 92.4 95 46.3
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.1e-17 92.0 78 53.8
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.6e-16 89.0 91 48.4
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.1e-14 83.6 80 50.0
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.4e-14 83.2 67 55.2
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 9.2e-14 80.5 63 65.1
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.2e-13 80.1 76 51.3
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 2.0e-13 79.3 74 50.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.5e-13 78.6 90 46.7
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-11 73.2 62 67.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.5e-11 72.4 63 54.0
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.2e-10 70.1 97 43.3
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 4.7e-10 68.2 57 59.6
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.8e-09 66.2 48 66.7
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 2.0e-08 62.8 65 50.8
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.7e-07 59.7 55 50.9
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 1.7e-07 59.7 80 35.0
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.4e-06 56.6 62 45.2
Eucgr.H03665 Eucalyptus grandis HOM05D000262 ORTHO05D009865 2.4e-06 55.8 93 35.5
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 4.1e-06 55.1 95 37.9
Psat4g029920 Pisum sativum HOM05D000262 ORTHO05D009865 7.1e-06 54.3 82 36.6
Cfa015514 Carpinus fangiana HOM05D009269 ORTHO05D009865 9.2e-06 53.9 57 45.6
Ciclev10007094m.g Citrus clementina HOM05D000262 ORTHO05D009865 9.2e-06 53.9 62 40.3
FvH4_3g29750 Fragaria vesca HOM05D009285 ORTHO05D009865 9.2e-06 53.9 76 35.5


User provided reference genes

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