Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.7e-35 152.1 76 100.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.6e-33 145.6 76 96.1
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 7.5e-28 126.7 74 83.8
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.2e-27 125.2 76 82.9
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.4e-26 121.7 75 82.7
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-26 121.3 74 79.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.1e-26 120.9 74 78.4
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 7.0e-26 120.2 76 77.6
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.2e-25 119.4 72 77.8
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 3.5e-25 117.9 72 77.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.6e-25 117.5 77 79.2
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.3e-24 115.9 66 83.3
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 1.7e-24 115.5 73 76.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.7e-24 115.5 72 76.4
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.9e-23 112.1 74 77.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-23 112.1 73 74.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.9e-23 112.1 71 74.6
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 5.6e-23 110.5 73 74.0
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.8e-22 108.2 71 74.6
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.6e-22 107.8 74 71.6
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 4.7e-22 107.5 73 72.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 6.2e-22 107.1 71 74.6
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 8.1e-22 106.7 73 71.2
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-21 105.9 69 76.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.4e-21 105.9 69 76.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.8e-21 105.5 72 75.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 6.8e-21 103.6 69 75.4
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 8.9e-21 103.2 75 72.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.2e-20 102.8 74 68.9
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.5e-20 102.4 79 67.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.5e-20 102.4 69 75.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 1.5e-20 102.4 72 69.4
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 3.4e-20 101.3 73 69.9
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 7.5e-20 100.1 74 64.9
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.7e-19 99.0 79 65.8
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.7e-19 99.0 75 66.7
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.7e-19 99.0 71 62.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.2e-19 98.6 76 71.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 6.4e-19 97.1 68 72.1
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 6.4e-19 97.1 73 68.5
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 8.3e-19 96.7 76 69.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 8.3e-19 96.7 75 66.7
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.1e-18 96.3 75 65.3
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.4e-18 95.9 69 71.0
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.4e-18 95.9 73 67.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.9e-18 95.5 69 63.8
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.4e-18 95.1 72 68.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 3.2e-18 94.7 74 63.5
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 7.1e-18 93.6 73 64.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.1e-18 93.6 68 69.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 67.1
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 67.1
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 67.1
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.6e-17 90.9 73 65.8
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 7.8e-17 90.1 81 59.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.0e-16 88.2 74 59.5
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 3.9e-16 87.8 71 64.8
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 6.6e-16 87.0 83 56.6
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 6.6e-16 87.0 83 56.6
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 8.6e-16 86.7 70 68.6
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.6e-16 86.7 68 63.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 8.6e-16 86.7 70 68.6
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 8.6e-16 86.7 70 68.6
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 8.6e-16 86.7 70 68.6
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.1e-15 86.3 77 59.7
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.9e-15 85.5 69 62.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 2.5e-15 85.1 81 59.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-15 85.1 69 60.9
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 3.3e-15 84.7 65 67.7
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.3e-15 84.3 68 69.1
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 5.6e-15 84.0 69 60.9
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.6e-15 84.0 75 61.3
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 7.3e-15 83.6 85 54.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 7.3e-15 83.6 81 55.6
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 9.5e-15 83.2 67 64.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.5e-15 83.2 71 59.2
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 9.5e-15 83.2 65 61.5
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 9.5e-15 83.2 73 58.9
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.1e-14 82.0 75 61.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.1e-14 80.1 80 53.8
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 8.1e-14 80.1 71 50.7
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 56.1
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 56.1
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.4e-13 79.3 75 57.3
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-13 79.3 79 54.4
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.4e-13 79.3 67 58.2
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.8e-13 79.0 72 55.6
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.1e-13 78.2 84 51.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-13 78.2 84 57.1
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 53.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 82 54.9
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 53.2
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.1e-13 78.2 82 54.9
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 53.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 50.6
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 53.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.1e-13 78.2 76 56.6
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.0e-13 77.8 75 53.3
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 4.0e-13 77.8 73 54.8
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 53.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 53.2
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 53.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 53.2
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 55.8
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.2e-13 77.4 76 56.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 5.2e-13 77.4 67 53.7
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 6.8e-13 77.0 77 58.4
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-13 77.0 72 59.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 6.8e-13 77.0 72 54.2
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.8e-13 77.0 71 54.9
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 6.8e-13 77.0 63 57.1
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 8.9e-13 76.6 80 51.2
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 8.9e-13 76.6 72 55.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 8.9e-13 76.6 72 55.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 8.9e-13 76.6 72 55.6
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.2e-12 76.3 77 54.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-12 76.3 72 52.8
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-12 76.3 76 56.6
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-12 76.3 77 55.8
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-12 76.3 72 52.8
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-12 76.3 77 55.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.2e-12 76.3 65 53.8
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.5e-12 75.9 75 52.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 71 56.3
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-12 75.5 75 56.0
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 2.6e-12 75.1 77 51.9
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-12 74.7 81 50.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 4.4e-12 74.3 76 51.3
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 4.4e-12 74.3 76 51.3
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 4.4e-12 74.3 76 51.3
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 4.4e-12 74.3 76 51.3
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 4.4e-12 74.3 76 51.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.4e-12 74.3 79 54.4
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.3e-11 72.8 55 67.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.3e-11 72.8 64 57.8
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.9e-11 70.9 64 54.7
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.9e-11 70.9 64 59.4
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 8.4e-11 70.1 79 51.9
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.4e-10 69.3 59 59.3
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.4e-10 67.4 63 57.1
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.1e-10 67.0 64 51.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.5e-09 64.7 81 49.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 7.8e-09 63.5 73 49.3
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.3e-08 62.8 77 44.2
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 3.0e-08 61.6 87 41.4
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 3.0e-08 61.6 94 41.5
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 6.6e-08 60.5 81 43.2
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 7.3e-07 57.0 60 51.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.6e-06 54.7 81 39.5
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 4.7e-06 54.3 85 40.0


User provided reference genes

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