Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.8e-214 749.2 440 100.0
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 5.0e-124 448.7 464 67.9
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 5.2e-113 412.1 458 65.3
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.7e-108 397.1 416 65.1
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.7e-82 309.3 459 53.6
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 6.2e-82 308.9 454 50.7
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 5.4e-78 295.8 454 49.3
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 3.2e-70 270.0 457 45.5
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 4.9e-63 246.1 348 42.5
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 4.9e-63 246.1 466 39.3
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 9.3e-62 241.9 422 47.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 3.4e-56 223.4 348 41.7
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 2.9e-55 220.3 422 45.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 2.5e-54 217.2 453 43.3
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 7.9e-53 212.2 359 50.1
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.1e-51 208.4 344 37.8
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 3.3e-51 206.8 453 38.0
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 4.3e-51 206.5 453 37.5
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 4.1e-49 199.9 449 35.4
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.2e-48 198.4 454 32.8
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 2.5e-43 180.6 461 39.9
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.4e-41 174.9 346 35.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 4.1e-41 173.3 347 33.7
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 5.3e-41 172.9 347 33.1
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.5e-40 171.4 347 33.7
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 2.0e-40 171.0 458 40.2
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 4.5e-40 169.9 457 34.1
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 5.9e-40 169.5 347 33.4
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 6.5e-39 166.0 453 38.4
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 2.1e-37 161.0 420 37.6
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.6e-37 159.8 339 34.5
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.0e-36 158.7 345 32.2
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.0e-36 158.7 449 39.0
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.0e-36 158.7 343 33.2
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 3.9e-36 156.8 455 39.3
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 3.9e-36 156.8 454 38.5
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 3.9e-36 156.8 456 38.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.5e-35 154.8 463 39.3
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.5e-35 154.8 457 38.1
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 2.0e-35 154.5 463 39.1
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.0e-35 154.5 340 32.1
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.5e-35 154.1 353 32.0
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.3e-35 153.7 453 39.1
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.3e-35 153.7 339 33.0
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 4.3e-35 153.3 342 33.0
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 4.3e-35 153.3 342 33.0
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 4.3e-35 153.3 465 38.7
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 5.7e-35 152.9 453 38.6
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.7e-34 151.4 347 33.1
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 2.8e-34 150.6 355 31.8
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 4.8e-34 149.8 346 32.9
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 4.8e-34 149.8 344 32.8
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 8.2e-34 149.1 453 38.4
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.8e-33 147.9 454 37.9
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 5.3e-33 146.4 452 37.2
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 2.6e-32 144.1 467 27.8
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 3.4e-32 143.7 352 29.8
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 7.7e-32 142.5 454 38.1
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.7e-31 141.4 465 36.3
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 3.8e-31 140.2 435 28.3
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 3.8e-31 140.2 456 36.0
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.9e-30 137.9 451 27.7
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 4.2e-30 136.7 453 33.3
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.1e-29 134.4 466 31.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.1e-29 132.9 342 30.4
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 6.1e-29 132.9 348 30.2
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 3.0e-28 130.6 339 30.4
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 3.3e-27 127.1 338 30.2
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 3.3e-27 127.1 339 29.8
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 4.4e-27 126.7 209 38.8
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 2.4e-25 120.9 249 34.1
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.6e-24 118.2 210 38.6
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.6e-24 118.2 339 28.6
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 3.8e-23 113.6 316 31.3
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 3.2e-22 110.5 451 29.5
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.8e-20 104.8 108 54.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 6.7e-20 102.8 178 36.5
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 5.7e-19 99.8 350 24.0
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 5.9e-16 89.7 341 24.6
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-10 71.6 112 39.3
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 2.2e-10 71.2 155 34.2
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 3.1e-09 67.4 68 51.5
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 1.3e-07 62.0 126 30.2
Thecc.07G021000 Theobroma cacao HOM05D007725 ORTHO05D009774 8.5e-07 59.3 50 60.0
Thecc.07G021800 Theobroma cacao HOM05D007725 ORTHO05D009774 9.4e-06 55.8 83 41.0


User provided reference genes

Program Settings