Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 3130.1 1581 100.0
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 2295.4 1616 74.2
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 2256.9 1615 73.3
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 2211.8 1595 72.5
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 2165.2 1598 71.7
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 2159.8 1601 70.8
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 2141.7 1518 73.1
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 2135.9 1616 69.9
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 2040.0 1527 70.9
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 2024.6 1778 62.1
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 2011.9 1584 67.6
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1611.7 1083 74.2
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1594.3 1619 53.9
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1588.2 1696 52.8
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1550.0 1739 51.1
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1512.7 1605 52.0
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1503.8 1638 50.7
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1497.3 1600 53.0
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1483.8 1603 51.4
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1482.6 1658 50.0
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1475.3 1663 50.3
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1468.8 1605 50.9
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1467.2 1604 51.6
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1458.0 1631 50.5
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1456.8 1595 51.6
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1454.1 1578 51.3
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1451.0 1631 50.5
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1448.3 1597 51.8
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1448.0 1639 49.8
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1446.8 1585 50.4
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1445.6 1595 51.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1444.5 1627 50.3
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1443.7 1595 51.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1440.2 1604 50.6
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1437.9 1595 50.8
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1427.9 1640 49.3
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1427.2 1595 50.3
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1397.9 1651 47.8
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1392.5 1656 47.5
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1382.1 1279 57.0
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1371.3 1379 53.8
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1370.5 1503 51.1
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1367.1 1650 48.5
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1363.2 1623 47.4
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1362.1 1621 49.0
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1352.4 1663 47.9
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1347.8 1629 47.0
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1344.7 1622 48.3
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1333.5 1654 46.8
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1327.8 1621 46.7
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1325.1 1613 47.2
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1310.8 1596 47.6
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1305.8 1608 46.4
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1293.9 1613 46.2
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1291.6 1599 46.6
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1291.2 1373 51.8
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1291.2 1605 46.4
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1290.0 1616 45.9
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1286.2 1490 48.3
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1270.0 1600 46.5
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1265.8 1585 46.1
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1260.0 1224 54.7
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1258.4 1599 46.5
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1249.6 1500 48.4
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1247.3 1567 46.4
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1243.0 1604 45.0
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1241.9 1619 45.0
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1240.3 1629 45.9
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1236.5 1663 45.0
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1233.0 1609 45.4
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1231.5 1576 45.5
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1225.3 1710 43.5
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1218.8 1589 45.8
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1218.4 1623 44.4
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1213.4 1597 45.0
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1206.4 1650 43.6
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1203.3 1573 44.8
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1199.5 1597 44.8
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1197.6 1591 44.1
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1194.9 1592 44.0
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1189.9 1577 44.6
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1177.5 1574 44.7
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 0.0e+00 1144.0 1568 44.4
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1126.3 1684 40.4
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 0.0e+00 1123.2 1577 43.4
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1083.9 1592 41.3
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1079.7 1330 46.2
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1079.7 1332 46.1
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1079.3 1334 46.3
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1078.9 1497 42.8
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.8e-309 1066.6 1341 45.6
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 2.6e-295 1019.6 1564 40.2
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 7.4e-295 1018.1 1020 53.7
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.0e-288 997.7 1628 39.4
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.7e-275 953.7 967 52.3
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 2.3e-272 943.3 1583 38.8
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.0e-243 848.2 602 73.8
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.4e-189 668.3 1019 40.1
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 4.2e-181 640.2 1623 30.6
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 6.3e-177 626.3 1729 30.4
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 1.8e-176 624.8 1543 31.7
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 2.5e-173 614.4 1589 31.6
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 7.2e-173 612.8 817 45.7
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.6e-164 583.9 804 42.3
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.8e-147 528.5 822 38.3
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 3.2e-144 517.7 905 35.2
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 9.5e-133 479.6 1222 28.3
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.2e-130 472.6 1520 28.2
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.4e-128 465.7 683 43.9
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 1.6e-127 462.2 712 39.7
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 3.8e-121 441.0 608 42.1
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 1.3e-118 432.6 415 60.5
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 1.1e-115 422.9 546 45.6
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 7.1e-104 383.6 400 52.5
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 6.2e-100 370.5 510 42.7
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.4e-91 342.0 596 39.3
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 3.5e-87 328.2 290 56.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.0e-65 256.9 193 65.3
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 5.7e-61 241.1 414 36.7
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 5.9e-58 231.1 480 35.6
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 5.7e-53 214.5 141 69.5
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.0e-49 203.8 968 24.2
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 1.0e-38 167.2 146 64.4
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 2.5e-32 146.0 310 36.5
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 9.5e-32 144.1 232 40.5
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.0e-30 138.7 122 54.1
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.5e-29 136.7 281 35.2
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 1.5e-29 136.7 306 34.6
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 8.3e-28 131.0 161 46.6
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 1.1e-27 130.6 131 53.4
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 1.4e-27 130.2 134 53.0
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 3.2e-27 129.0 127 49.6
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 1.0e-25 124.0 70 85.7
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.0e-25 122.5 209 40.2
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.6e-25 121.3 132 47.7
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-24 119.8 209 39.7
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.6e-24 118.2 209 39.7
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.3e-24 117.9 209 39.7
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.8e-23 115.9 170 41.2
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.2e-20 106.3 185 35.7
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.2e-18 100.5 247 33.6
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 2.0e-18 99.8 107 57.0
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-17 96.7 155 38.7
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 3.0e-17 95.9 61 77.0
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.0e-17 95.1 155 38.1
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.6e-15 90.1 155 36.8
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.1e-15 89.7 157 38.2
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-15 88.6 155 36.8
Medtr2g060610 Medicago truncatula HOM05D004423 ORTHO05D005464 4.0e-14 85.5 73 65.8
Lalb_Chr10g0099061 Lupinus albus HOM05D004423 ORTHO05D005464 5.2e-14 85.1 63 71.4
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 1.5e-13 83.6 604 22.2
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 5.8e-13 81.6 109 40.4
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 1.3e-12 80.5 235 29.4
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.9e-12 79.3 124 35.5
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-11 77.0 139 38.8
Medtr2g060570 Medicago truncatula HOM05D004423 ORTHO05D005464 1.6e-10 73.6 93 48.4
Medtr2g060565 Medicago truncatula HOM05D004423 ORTHO05D005464 2.3e-09 69.7 57 61.4
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 3.9e-09 68.9 354 26.8
Cre03.g168650 Chlamydomonas reinhardtii HOM05D004423 ORTHO05D044124 2.4e-06 59.7 333 24.9
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.9e-06 57.8 107 30.8


User provided reference genes

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