Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 8.8e-235 816.6 425 100.0
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 3.6e-188 661.8 432 80.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 4.7e-188 661.4 431 83.1
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.4e-186 655.2 431 82.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.5e-181 639.0 429 80.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 8.4e-177 624.0 441 78.5
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.2e-175 620.2 430 77.7
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.0e-174 615.5 430 76.5
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.9e-173 612.8 402 77.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.6e-151 538.9 434 71.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 9.7e-149 530.8 396 71.2
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.4e-147 526.9 392 71.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.4e-147 526.9 399 70.2
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 6.9e-147 524.6 428 67.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 9.1e-147 524.2 404 69.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.0e-146 523.1 391 72.1
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 3.4e-146 522.3 437 70.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.5e-146 521.9 391 71.9
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.7e-145 520.0 428 69.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.0e-145 518.5 391 69.8
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-144 516.9 408 67.6
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.4e-144 516.9 395 69.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.4e-144 516.9 395 69.9
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.5e-144 516.2 403 67.5
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-144 516.2 395 69.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-144 516.2 385 71.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-144 516.2 395 69.9
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 7.9e-143 511.1 431 65.9
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 3.0e-142 509.2 389 68.6
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 5.1e-142 508.4 402 68.2
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.5e-141 506.9 432 66.7
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-141 506.5 430 67.4
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.7e-140 503.4 433 66.1
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.3e-140 501.5 399 67.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.1e-139 500.7 391 69.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.8e-139 500.0 395 68.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.4e-139 499.6 432 66.4
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 7.7e-138 494.6 395 66.6
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.9e-137 492.7 388 68.8
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.8e-137 492.3 388 67.3
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.0e-137 491.9 430 65.1
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.5e-136 489.6 435 65.3
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 5.5e-136 488.4 434 64.7
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.1e-135 486.5 429 65.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 6.1e-135 485.0 395 67.1
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 6.1e-135 485.0 384 65.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.4e-134 483.8 389 65.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 6.7e-134 481.5 392 66.3
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.5e-133 480.3 393 66.2
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 7.4e-133 478.0 406 63.8
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.7e-133 477.6 389 64.5
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.7e-133 477.6 436 63.8
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.8e-132 476.1 390 63.8
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.8e-132 475.3 389 65.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 4.8e-132 475.3 389 65.3
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 8.2e-132 474.6 438 63.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.2e-132 474.6 389 65.3
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 8.2e-132 474.6 389 66.1
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.4e-131 473.8 437 60.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.4e-131 473.8 393 65.1
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.4e-131 473.8 434 65.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.8e-131 473.4 402 63.9
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 9.1e-131 471.1 392 65.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.0e-130 469.9 384 63.8
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.6e-130 469.5 384 63.8
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.5e-130 469.2 397 64.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 3.5e-130 469.2 439 62.0
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.7e-130 468.0 394 64.0
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 7.7e-130 468.0 383 64.0
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.0e-129 467.6 382 63.9
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.5e-128 463.8 394 63.5
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.5e-128 463.0 440 62.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.5e-128 463.0 393 64.6
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.6e-127 460.3 403 60.8
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-127 460.3 389 64.8
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.6e-127 459.1 429 62.0
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.6e-127 459.1 388 65.2
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 6.1e-127 458.4 387 65.4
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.3e-126 456.4 429 62.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 3.0e-126 456.1 378 65.3
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 6.7e-126 454.9 387 65.4
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.8e-126 454.5 429 61.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.2e-125 454.1 388 62.4
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.5e-125 453.8 398 62.1
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.0e-125 453.4 392 64.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.6e-125 453.0 386 65.0
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.5e-125 451.4 388 63.9
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 9.7e-125 451.1 386 64.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 9.7e-125 451.1 386 64.8
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.8e-124 448.7 388 61.6
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.1e-123 447.6 391 63.2
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.4e-123 447.2 388 63.9
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.8e-123 446.8 399 60.7
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.4e-123 446.4 404 64.6
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.2e-122 444.1 398 61.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 7.7e-122 441.4 391 60.6
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.2e-121 439.9 387 61.5
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-120 437.6 391 62.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.6e-119 433.7 429 59.7
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.7e-119 433.0 429 57.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.0e-118 429.5 358 64.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.4e-117 425.6 380 60.8
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.3e-116 424.1 430 58.1
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.7e-116 423.7 428 58.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-116 423.7 391 59.3
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.3e-116 421.8 381 60.1
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.8e-115 420.2 379 60.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-115 419.5 393 58.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 9.1e-115 417.9 390 57.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.5e-114 415.6 400 58.2
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.9e-113 412.9 382 59.4
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 6.6e-113 411.8 392 58.7
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.7e-108 396.0 415 53.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.8e-107 393.7 380 56.8
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.1e-107 392.9 392 55.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.2e-107 391.3 392 54.8
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 9.2e-107 391.3 246 80.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-106 391.0 392 56.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.7e-106 389.8 391 55.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.9e-106 388.7 381 55.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.4e-102 377.5 321 61.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.3e-100 368.2 393 51.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.8e-94 350.5 310 61.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.7e-79 299.3 338 52.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-69 268.1 295 50.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 9.9e-69 265.0 193 83.4
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.1e-67 261.5 396 41.4
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.4e-62 244.6 235 57.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.6e-58 229.6 165 72.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 2.1e-55 220.7 250 48.8
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.3e-54 216.1 190 68.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.0e-53 214.2 159 71.1
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 2.7e-50 203.8 224 49.6
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.6e-48 196.1 202 56.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 8.2e-47 192.2 195 55.9
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 7.6e-45 185.7 423 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.4e-43 181.4 310 36.8
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 6.3e-23 112.8 110 59.1
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.8e-15 87.4 66 65.2
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.8e-14 84.7 75 56.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.5e-11 73.2 161 34.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.4e-06 57.8 148 33.1
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 9.1e-06 55.8 36 61.1


User provided reference genes

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