Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 2.2e-97 359.0 183 100.0
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 1.6e-76 289.7 182 82.4
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 1.8e-75 286.2 179 83.2
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 5.2e-75 284.6 182 81.9
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 5.2e-75 284.6 179 82.1
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 5.8e-74 281.2 181 81.2
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 1.7e-73 279.6 178 82.0
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 4.9e-73 278.1 182 79.1
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 2.0e-71 272.7 182 79.7
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 6.6e-70 267.7 177 76.8
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 6.6e-70 267.7 177 76.8
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 2.8e-68 262.3 175 78.9
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 6.2e-68 261.2 183 77.0
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 6.2e-68 261.2 182 75.3
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.6e-55 219.9 172 66.9
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 3.5e-55 218.8 152 77.0
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 5.6e-53 211.5 171 64.9
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 1.6e-52 209.9 175 62.9
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 8.1e-52 207.6 177 62.7
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 5.2e-51 204.9 176 58.5
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.4e-50 201.8 181 60.2
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 7.6e-50 201.1 181 60.2
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 1.7e-49 199.9 173 61.3
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 3.8e-49 198.7 181 59.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 3.2e-48 195.7 185 61.6
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 3.5e-47 192.2 179 60.9
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 6.0e-47 191.4 177 59.3
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 6.6e-46 188.0 171 56.1
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 1.9e-45 186.4 168 58.3
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 2.5e-45 186.0 176 56.8
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 2.5e-45 186.0 179 58.7
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 2.5e-45 186.0 177 54.2
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 9.6e-45 184.1 169 59.8
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 2.1e-44 183.0 178 52.8
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 6.2e-44 181.4 172 59.9
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 6.2e-44 181.4 174 57.5
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 8.1e-44 181.0 172 58.1
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.1e-43 180.6 167 60.5
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.4e-43 180.3 216 49.1
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.4e-43 179.5 183 55.2
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 3.1e-43 179.1 171 54.4
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 5.2e-43 178.3 171 57.9
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.5e-42 176.8 169 59.2
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 2.0e-42 176.4 181 52.5
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 3.4e-42 175.6 178 55.6
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 5.8e-42 174.9 175 52.6
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 8.4e-41 171.0 175 55.4
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 8.4e-41 171.0 175 55.4
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 1.1e-40 170.6 173 52.6
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 3.2e-40 169.1 173 53.2
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 5.4e-40 168.3 179 54.7
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 1.6e-39 166.8 187 50.8
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 6.0e-39 164.9 177 46.9
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 6.0e-39 164.9 180 53.9
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 5.1e-38 161.8 187 48.7
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 5.1e-38 161.8 176 49.4
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.1e-37 160.6 125 62.4
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 1.5e-37 160.2 173 52.6
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 1.9e-37 159.8 176 50.0
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 2.5e-37 159.5 178 50.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 3.3e-37 159.1 177 46.3
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 4.3e-37 158.7 168 51.8
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 5.6e-37 158.3 173 52.6
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 5.6e-37 158.3 173 52.6
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.3e-36 157.1 183 48.1
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 1.3e-36 157.1 173 50.9
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 1.3e-36 157.1 197 49.2
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 2.8e-36 156.0 173 53.2
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 3.6e-36 155.6 183 47.5
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 4.8e-36 155.2 170 53.5
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 8.1e-36 154.5 170 54.7
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 1.4e-35 153.7 172 53.5
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 3.1e-35 152.5 188 49.5
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.1e-35 152.5 170 53.5
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 4.0e-35 152.1 175 50.3
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 2.0e-34 149.8 182 50.0
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 2.6e-34 149.4 175 50.9
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 9.9e-34 147.5 172 45.3
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 1.3e-33 147.1 169 49.1
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 1.3e-33 147.1 169 49.1
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 6.4e-33 144.8 197 46.7
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 8.4e-33 144.4 166 50.0
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 1.1e-32 144.1 169 47.3
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 1.1e-32 144.1 171 48.5
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.2e-31 140.6 163 50.3
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.2e-31 140.6 170 47.1
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 1.6e-31 140.2 167 47.3
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 2.7e-31 139.4 189 45.5
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 3.5e-31 139.0 186 46.2
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 2.3e-30 136.3 182 46.7
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 2.3e-30 136.3 94 69.1
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 4.3e-29 132.1 85 72.9
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 7.4e-29 131.3 156 51.3
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 4.8e-28 128.6 162 46.3
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 2.4e-27 126.3 95 64.2
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.1e-27 125.9 168 45.2
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 4.0e-27 125.6 175 44.0
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 2.6e-26 122.9 181 45.9
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.3e-25 120.6 84 71.4
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 1.3e-25 120.6 183 43.2
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 1.6e-23 113.6 169 44.4
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.6e-23 112.1 147 44.9
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 6.0e-23 111.7 210 37.1
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 3.9e-22 109.0 161 44.7
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.4e-19 100.5 84 57.1
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.8e-19 100.1 169 36.7
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 3.1e-19 99.4 160 38.8
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.2e-18 97.4 71 69.0
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 2.0e-18 96.7 190 37.9
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 2.0e-18 96.7 190 37.9
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 5.8e-18 95.1 78 66.7
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 1.0e-17 94.4 89 50.6
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 3.8e-17 92.4 83 62.7
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 4.9e-17 92.0 166 39.8
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.7e-15 86.3 74 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 1.3e-12 77.4 132 37.1
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 2.2e-12 76.6 141 35.5
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.4e-11 73.2 84 52.4
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 5.0e-09 65.5 132 34.8


User provided reference genes

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