Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 7.0e-125 450.7 233 100.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.0e-96 357.1 235 80.9
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 4.0e-96 355.1 236 79.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 5.2e-96 354.8 235 80.0
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.1e-93 347.1 234 79.5
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-93 346.7 236 80.1
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 3.2e-93 345.5 236 79.7
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.7e-92 342.4 236 76.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.6e-92 341.7 234 78.6
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 8.1e-89 330.9 235 75.7
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 5.2e-88 328.2 233 75.5
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.6e-87 325.9 229 76.9
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 4.1e-85 318.5 226 76.5
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.9e-82 309.7 232 71.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.3e-80 302.8 229 71.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 3.8e-78 295.4 230 69.1
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.8e-78 295.4 230 69.6
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.9e-75 285.4 230 69.1
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.6e-75 284.6 230 68.7
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 5.6e-74 281.6 233 64.8
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 7.3e-74 281.2 231 67.1
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.8e-72 276.6 230 64.8
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.4e-72 276.2 230 66.5
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.2e-71 273.9 231 65.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.6e-71 272.7 230 64.8
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.4e-71 272.3 230 67.4
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 5.8e-71 271.6 230 66.5
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 9.9e-71 270.8 230 67.0
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 1.7e-70 270.0 231 62.3
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.8e-70 268.9 229 64.6
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.8e-70 268.9 229 65.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.9e-70 268.5 230 66.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-69 267.3 230 65.7
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.9e-69 266.5 231 63.2
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.4e-69 266.2 232 62.5
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 4.2e-69 265.4 230 64.8
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.2e-69 265.4 230 63.5
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.2e-69 265.4 230 63.5
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 5.4e-69 265.0 231 63.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.4e-69 265.0 229 63.3
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.4e-69 265.0 231 61.9
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-68 263.8 230 63.0
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.2e-68 263.8 229 62.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.1e-68 263.1 232 63.8
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.5e-68 262.3 235 64.7
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 3.5e-68 262.3 234 63.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.6e-68 261.9 231 62.8
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.6e-68 261.9 229 62.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 7.8e-68 261.2 230 63.9
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.8e-68 261.2 232 62.9
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.3e-67 259.6 181 72.9
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.0e-67 259.2 231 62.3
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.9e-67 258.8 231 62.8
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 3.9e-67 258.8 231 62.3
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 6.6e-67 258.1 228 63.2
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.1e-66 257.3 231 61.9
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.5e-66 256.9 231 61.5
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.9e-66 256.5 232 62.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 2.5e-66 256.1 228 61.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.5e-66 256.1 230 64.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.5e-66 256.1 199 68.3
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.5e-66 256.1 231 62.3
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.3e-66 255.8 230 60.4
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.3e-66 255.4 251 58.6
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 4.3e-66 255.4 230 61.3
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.3e-66 255.4 259 57.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 5.6e-66 255.0 231 61.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.3e-66 254.6 230 60.9
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.6e-66 254.2 235 61.3
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 9.6e-66 254.2 231 60.6
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 9.6e-66 254.2 197 68.5
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-65 253.8 230 64.3
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.1e-65 253.1 227 60.4
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-64 250.8 230 63.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-64 250.4 221 64.7
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.4e-64 250.4 231 59.7
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.8e-64 250.0 235 58.7
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.1e-64 249.2 197 66.0
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 4.0e-64 248.8 226 61.5
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.0e-64 248.8 206 65.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.3e-64 248.4 208 63.5
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 9.0e-64 247.7 231 57.6
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.5e-63 246.9 229 61.1
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 4.5e-63 245.4 230 60.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 5.8e-63 245.0 232 59.1
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 9.9e-63 244.2 231 61.5
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.7e-62 243.4 230 61.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.2e-62 243.0 231 60.2
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.2e-62 243.0 230 61.7
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.2e-62 243.0 231 60.6
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.9e-61 240.0 229 59.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.4e-61 239.6 264 52.7
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.1e-61 238.0 229 57.6
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.1e-60 236.5 221 61.5
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.7e-60 236.1 198 62.1
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.7e-60 236.1 234 58.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 4.6e-60 235.3 203 62.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.8e-59 233.4 235 56.2
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 3.0e-59 232.6 229 56.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.9e-59 232.3 172 67.4
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.9e-59 232.3 237 58.6
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-58 230.7 231 58.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.5e-58 230.3 200 61.5
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.3e-58 229.2 172 71.5
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 5.6e-58 228.4 234 55.6
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.4e-58 228.0 177 66.1
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.8e-57 226.1 183 67.8
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 6.2e-57 224.9 168 69.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.4e-56 223.8 211 58.3
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-56 223.8 230 54.8
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.4e-56 223.8 230 54.8
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 2.4e-56 223.0 230 57.0
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 5.3e-56 221.9 237 55.3
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 9.0e-56 221.1 231 56.7
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 5.8e-55 218.4 233 55.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 7.6e-55 218.0 236 55.5
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.7e-54 216.9 151 72.2
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 6.4e-54 214.9 155 73.5
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-53 213.8 233 55.8
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-53 213.8 233 55.8
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.9e-53 213.4 252 51.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.1e-52 209.9 233 52.8
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-52 209.5 228 56.1
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 6.7e-51 204.9 173 61.3
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.3e-49 200.7 151 66.2
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.1e-48 197.6 233 50.6
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 3.1e-48 196.1 224 54.0
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 6.9e-48 194.9 214 54.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 7.6e-47 191.4 234 50.9
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.4e-45 187.2 134 70.9
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.2e-45 186.0 185 56.8
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.6e-44 183.7 150 65.3
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.5e-44 182.6 229 48.9
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.5e-44 182.6 182 54.4
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.1e-42 177.6 230 47.0
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.5e-42 176.4 128 68.0
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.1e-40 169.1 230 46.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 7.6e-39 164.9 99 83.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 8.5e-38 161.4 152 57.9
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 5.1e-35 152.1 110 71.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.3e-33 147.5 141 56.7
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.3e-33 145.2 130 60.8
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 8.2e-33 144.8 123 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.0e-31 140.2 132 57.6
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 7.7e-31 138.3 154 51.9
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.5e-29 133.3 153 55.6
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.6e-28 129.4 99 62.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.1e-28 128.6 140 50.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 3.0e-27 126.3 76 81.6
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-21 106.7 71 78.9
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-18 97.1 95 60.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 2.0e-18 97.1 95 60.0
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.8e-17 92.4 64 76.6
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.3e-16 89.0 63 66.7
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.2e-12 77.8 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.3e-11 73.6 133 33.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 3.3e-10 69.7 100 40.0


User provided reference genes

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