Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 6.7e-102 374.0 188 100.0
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 4.7e-63 245.0 205 66.3
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 8.8e-62 240.7 205 65.9
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 8.3e-60 234.2 209 66.5
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.4e-59 233.4 209 67.0
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.9e-57 225.7 212 64.6
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.8e-57 225.3 207 62.8
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 8.6e-57 224.2 209 65.6
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.5e-56 223.4 209 66.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.5e-56 223.4 208 63.5
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.5e-56 223.4 209 65.6
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.9e-56 223.0 192 66.7
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 3.3e-56 222.2 205 62.4
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 6.8e-54 214.5 208 61.5
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 8.9e-54 214.2 208 63.0
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.5e-53 213.4 208 63.0
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 2.2e-52 209.5 208 61.5
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.4e-51 206.1 210 62.4
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.1e-51 205.3 230 57.8
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 7.0e-51 204.5 207 57.5
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 1.2e-50 203.8 208 58.2
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 2.3e-49 199.5 207 56.0
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 3.9e-49 198.7 187 66.8
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 3.9e-49 198.7 208 58.2
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.9e-49 198.7 207 56.0
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 6.6e-49 198.0 208 56.7
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 6.6e-49 198.0 208 57.2
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 2.5e-48 196.1 209 57.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.3e-48 195.7 206 55.8
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 5.6e-48 194.9 207 56.5
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 7.3e-48 194.5 208 58.7
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 4.7e-47 191.8 207 56.0
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.1e-46 190.7 212 56.6
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.1e-46 190.7 207 55.6
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 4.0e-46 188.7 185 62.7
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.8e-46 188.0 209 55.0
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 8.9e-46 187.6 209 55.0
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.5e-45 186.8 207 53.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.5e-45 184.5 209 55.0
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.3e-44 183.7 210 53.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.7e-44 183.3 210 56.2
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.7e-44 183.3 210 53.8
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.7e-44 183.3 208 57.2
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.2e-44 183.0 209 56.0
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.7e-44 182.2 210 53.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.4e-43 179.5 207 52.7
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 4.1e-43 178.7 214 55.1
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 4.1e-43 178.7 161 64.0
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 9.2e-43 177.6 184 60.3
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.7e-42 176.0 207 55.6
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 4.6e-42 175.3 209 53.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.7e-41 173.3 208 52.4
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.9e-41 172.2 167 59.3
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 8.6e-41 171.0 207 52.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.1e-40 170.6 199 52.8
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.5e-40 170.2 184 56.5
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.5e-40 170.2 211 53.6
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.9e-40 169.9 184 58.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.2e-39 167.2 209 51.2
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.6e-39 166.8 178 56.2
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-39 166.8 210 52.9
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.1e-39 166.4 210 50.0
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 8.1e-39 164.5 211 51.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 8.1e-39 164.5 209 51.2
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.3e-38 162.9 210 50.0
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 6.8e-38 161.4 184 54.9
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 6.8e-38 161.4 210 51.0
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 6.8e-38 161.4 210 51.4
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 8.9e-38 161.0 198 56.6
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.0e-37 159.8 214 51.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.0e-37 159.8 210 50.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.4e-37 159.1 211 51.7
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.4e-37 158.7 210 49.5
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.5e-37 157.9 209 49.8
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.1e-35 154.1 194 52.1
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.9e-35 153.3 210 49.0
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.2e-34 150.6 210 47.1
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.2e-34 150.6 210 49.5
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.2e-34 150.6 210 48.6
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.2e-34 150.6 210 48.6
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.3e-33 147.1 208 44.2
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.3e-33 146.4 183 53.0
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.0e-33 146.0 184 51.6
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.1e-32 144.1 188 51.6
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.5e-32 142.9 184 53.8
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.3e-32 142.1 208 42.8
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.6e-32 141.7 185 50.3
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.8e-31 139.4 214 47.2
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.7e-31 138.7 130 59.2
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.8e-30 136.7 225 46.7
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.4e-30 136.3 187 50.3
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 5.2e-30 135.2 207 44.4
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 6.8e-30 134.8 187 50.8
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 8.9e-30 134.4 190 47.9
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.5e-29 133.7 208 42.3
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 2.0e-29 133.3 219 46.6
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.6e-29 132.9 205 45.9
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.6e-29 132.9 192 50.0
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 3.4e-29 132.5 205 42.4
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 4.4e-29 132.1 190 50.5
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 5.8e-29 131.7 208 44.7
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 7.6e-29 131.3 190 47.9
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.3e-28 130.6 183 51.4
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.3e-28 130.6 186 51.6
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.3e-28 130.6 187 49.7
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.7e-28 130.2 215 45.1
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 1.7e-28 130.2 227 44.5
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 4.9e-28 128.6 190 48.9
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 6.4e-28 128.3 184 47.3
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 6.4e-28 128.3 217 43.8
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 8.4e-28 127.9 218 43.6
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 1.1e-27 127.5 208 46.2
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.4e-27 127.1 209 45.0
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 3.2e-27 125.9 187 48.1
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 9.2e-27 124.4 205 41.5
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.2e-26 124.0 207 44.0
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 2.7e-26 122.9 203 45.8
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 3.5e-26 122.5 207 44.0
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.0e-26 121.7 196 46.9
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-25 119.8 208 45.7
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 6.6e-25 118.2 222 42.8
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 6.6e-25 118.2 205 41.0
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.5e-24 117.1 226 42.5
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.5e-24 117.1 189 46.6
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.5e-24 116.3 207 39.1
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 4.3e-24 115.5 213 44.1
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 7.3e-24 114.8 209 37.8
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.2e-23 114.0 215 42.3
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.1e-23 113.2 227 42.3
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 2.1e-23 113.2 192 44.3
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.8e-23 112.8 207 43.0
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 2.8e-23 112.8 208 38.0
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.8e-23 112.8 213 39.9
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 4.7e-23 112.1 216 38.0
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 4.7e-23 112.1 206 39.8
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.4e-22 110.5 208 40.4
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.2e-21 107.5 211 41.7
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.2e-21 107.5 225 39.1
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.2e-21 107.5 216 40.7
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.2e-21 107.5 213 39.4
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.5e-21 107.1 205 37.6
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.6e-21 106.3 167 44.3
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 5.8e-21 105.1 205 37.1
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 7.6e-21 104.8 204 37.7
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 9.9e-21 104.4 210 38.1
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.3e-20 104.0 205 38.5
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.3e-20 104.0 205 38.5
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.3e-20 104.0 205 38.5
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.3e-20 104.0 210 42.4
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.7e-20 103.6 207 41.1
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 2.9e-20 102.8 226 39.8
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 6.4e-20 101.7 207 37.7
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.1e-19 100.9 199 40.7
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 3.2e-19 99.4 195 41.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.2e-19 99.0 201 40.8
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 6.0e-18 95.1 238 34.0
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.3e-17 93.2 156 40.4
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 2.3e-17 93.2 175 42.3
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-16 90.1 181 37.0
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 4.3e-16 89.0 176 36.4
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 5.6e-16 88.6 212 38.2
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 7.3e-16 88.2 177 41.8
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 7.3e-16 88.2 184 37.5
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.3e-15 87.4 180 38.3
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.1e-14 84.3 162 40.7
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 1.8e-14 83.6 199 37.7
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.8e-14 83.6 183 37.2
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.8e-14 83.6 184 38.6
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 2.4e-14 83.2 228 36.8
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 2.6e-13 79.7 214 34.6
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.6e-10 70.5 143 36.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.7e-10 69.7 92 48.9
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.4e-06 57.4 140 30.7
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 3.1e-06 56.2 149 32.2
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 4.0e-06 55.8 146 31.5
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 5.3e-06 55.5 51 52.9
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 6.9e-06 55.1 128 33.6


User provided reference genes

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