Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 0.0e+00 1234.9 617 100.0
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 2.6e-272 941.8 617 76.7
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 5.0e-271 937.6 616 77.6
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.2e-269 932.9 619 77.7
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 6.3e-258 894.0 622 72.8
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 5.5e-254 880.9 595 75.8
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 5.2e-220 768.1 624 64.4
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 9.9e-219 763.8 633 63.2
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 3.3e-214 748.8 618 66.8
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.6e-208 729.9 624 61.2
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 3.9e-207 725.3 510 72.9
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 5.6e-206 721.5 616 61.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 9.6e-206 720.7 619 62.0
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 4.8e-205 718.4 618 62.5
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 6.2e-205 718.0 625 61.9
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 4.0e-204 715.3 617 61.1
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.3e-202 710.3 620 60.8
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 2.2e-202 709.5 623 62.0
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 8.4e-202 707.6 606 61.7
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 8.4e-202 707.6 615 62.1
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 5.4e-201 704.9 619 61.2
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 4.6e-200 701.8 625 59.7
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 6.6e-199 698.0 629 60.6
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.1e-198 697.2 618 60.4
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.6e-198 694.9 619 60.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 7.3e-198 694.5 598 61.2
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-197 693.7 619 60.3
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.6e-197 693.3 616 60.2
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 2.8e-197 692.6 619 59.3
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 2.8e-197 692.6 616 61.2
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 4.8e-197 691.8 630 60.3
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.4e-195 685.6 619 60.1
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 2.9e-194 682.6 530 65.7
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.9e-193 679.9 501 68.5
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.4e-193 679.5 589 61.0
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.1e-192 676.4 616 59.3
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 2.1e-192 676.4 605 57.5
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 2.7e-192 676.0 613 57.6
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 4.6e-192 675.2 614 57.5
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 7.9e-192 674.5 617 56.2
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.0e-191 674.1 614 58.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 2.3e-191 672.9 613 59.9
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-191 671.8 625 58.6
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.5e-190 669.5 616 57.1
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.6e-190 667.5 608 59.5
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.1e-189 666.4 438 74.2
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 4.8e-189 665.2 616 58.3
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.4e-188 663.7 617 57.7
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 6.9e-188 661.4 606 58.3
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 9.0e-188 661.0 448 75.2
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 1.2e-187 660.6 610 57.9
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.2e-187 660.6 606 58.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 3.4e-187 659.1 615 58.9
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.2e-186 656.4 616 56.7
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 2.9e-186 656.0 608 56.6
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 4.9e-186 655.2 595 62.0
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 4.9e-186 655.2 503 64.8
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.9e-185 653.3 607 57.3
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.5e-185 652.9 611 57.0
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.2e-185 652.1 616 57.1
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 7.1e-185 651.4 606 57.1
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.1e-184 649.8 611 57.0
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 2.1e-184 649.8 606 58.1
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 2.7e-184 649.4 578 58.0
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 6.0e-184 648.3 631 55.2
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.9e-184 647.9 625 56.8
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.0e-183 647.5 582 58.6
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.0e-183 647.5 655 52.5
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.9e-183 645.6 617 56.6
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 5.1e-183 645.2 618 56.3
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 6.7e-183 644.8 624 57.2
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-182 642.1 646 53.7
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 7.4e-182 641.3 621 57.8
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 9.0e-180 634.4 619 57.0
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 9.0e-180 634.4 575 59.3
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.6e-179 632.9 618 57.0
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 2.6e-179 632.9 609 57.0
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 3.8e-178 629.0 617 56.9
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 8.4e-178 627.9 497 64.0
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.4e-177 627.1 668 51.8
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.9e-177 626.7 596 55.4
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.7e-176 622.9 584 57.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 5.9e-171 605.1 487 65.1
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-170 604.4 635 55.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 8.5e-170 601.3 510 61.2
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 3.9e-167 592.4 500 63.2
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.5e-166 590.5 599 53.1
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.5e-163 580.5 599 52.1
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.2e-160 570.9 615 51.1
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 2.3e-159 566.6 606 52.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 5.7e-158 562.0 560 54.5
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.2e-153 546.2 574 52.3
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 2.8e-149 533.1 439 62.2
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 8.2e-149 531.6 469 54.8
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.2e-147 527.7 458 59.8
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 4.5e-147 525.8 487 53.6
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.9e-145 520.4 511 53.8
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 3.6e-128 463.0 634 42.6
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.6e-126 456.8 556 45.1
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.0e-122 444.9 354 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 3.1e-119 433.3 598 42.6
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 4.9e-117 426.0 361 61.2
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.7e-115 420.2 295 71.9
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 3.0e-114 416.8 343 62.7
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.8e-103 380.9 285 70.2
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.9e-97 360.9 401 45.6
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 8.1e-96 355.5 491 40.5
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.0e-90 337.0 334 56.0
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 2.5e-68 264.2 335 42.7
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.5e-68 264.2 212 59.9
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 2.1e-64 251.1 256 52.7
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-63 248.8 151 78.1
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-63 248.8 151 78.1
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-63 248.8 151 78.1
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-63 248.8 151 78.1
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 6.9e-63 246.1 380 37.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-59 235.0 172 62.8
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 8.2e-56 222.6 155 62.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.2e-52 210.3 195 55.4
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 3.1e-47 194.1 225 52.4
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 3.1e-47 194.1 194 55.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 9.4e-44 182.6 263 42.2
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 5.7e-41 173.3 138 70.3
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 5.3e-39 166.8 175 45.7
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 4.5e-38 163.7 556 29.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.2e-37 161.4 98 74.5
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 1.9e-36 158.3 245 41.6
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-31 141.0 151 51.7
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-30 138.7 229 37.1
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.5e-28 132.1 367 28.1
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.0e-26 124.0 150 43.3
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 6.8e-26 123.2 172 39.5
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 5.7e-25 120.2 89 60.7
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.6e-22 112.1 146 43.8
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.9e-20 105.1 91 64.8
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 8.8e-18 96.3 142 45.8
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-17 93.6 164 36.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 5.7e-17 93.6 82 69.5
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 8.3e-16 89.7 122 41.8
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.8e-15 88.6 45 84.4
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 7.7e-14 83.2 152 36.8
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 7.3e-12 76.6 63 60.3
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 1.4e-10 72.4 68 57.4
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 9.8e-09 66.2 72 40.3
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 3.7e-08 64.3 115 31.3
Psat0s1616g0080 Pisum sativum HOM05D024525 ORTHO05D005308 4.9e-08 63.9 49 65.3
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.1e-07 62.8 167 32.3
Psat2g119320 Pisum sativum HOM05D024525 ORTHO05D005308 2.0e-06 58.5 49 59.2
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-06 57.4 71 45.1
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 7.8e-06 56.6 51 51.0
Psat5g117880 Pisum sativum HOM05D024525 ORTHO05D005308 7.8e-06 56.6 48 58.3


User provided reference genes

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