Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.6e-289 998.0 515 100.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.0e-210 734.2 520 73.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 6.1e-206 721.1 521 72.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.8e-193 677.6 519 69.6
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 6.8e-189 664.5 518 67.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-184 649.4 529 65.6
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-184 649.4 529 65.6
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 8.9e-181 637.5 513 66.9
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 5.4e-178 628.2 521 64.3
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 4.0e-149 532.3 515 58.1
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.6e-134 483.8 525 53.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-133 481.1 519 52.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.9e-128 462.6 518 51.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.1e-128 462.2 523 51.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 4.6e-121 439.1 515 48.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 6.1e-121 438.7 520 46.5
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.5e-119 434.1 526 47.3
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.4e-117 426.8 520 47.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-113 414.5 519 44.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.8e-112 410.6 422 53.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.5e-111 407.5 531 46.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.3e-111 406.4 523 44.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.8e-109 400.6 521 44.3
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.9e-106 390.6 469 46.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.1e-105 385.6 522 42.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.0e-104 383.3 522 43.1
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-103 380.2 531 41.8
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 7.4e-103 378.6 465 46.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.8e-102 375.9 526 43.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 4.8e-102 375.9 529 42.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.0e-101 372.1 530 42.8
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 4.5e-100 369.4 461 45.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-99 367.9 466 45.1
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-99 367.5 487 44.1
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.1e-98 364.8 522 42.3
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-98 364.8 523 42.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.9e-98 364.0 484 42.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.2e-98 362.8 528 41.9
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-95 353.6 524 42.0
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-95 353.6 524 42.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-94 350.9 467 44.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.7e-94 349.7 510 40.6
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 8.3e-94 348.6 304 58.9
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.1e-93 346.3 440 43.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.2e-92 344.7 520 40.8
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.5e-92 343.2 534 39.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.5e-91 338.6 528 40.7
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-90 338.2 527 40.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.9e-90 337.4 520 39.6
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 7.2e-90 335.5 540 38.5
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.1e-89 332.4 525 39.4
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.7e-86 323.2 528 38.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.7e-86 323.2 530 39.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.1e-85 320.1 530 38.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 7.2e-82 308.9 529 39.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.0e-80 303.5 535 36.4
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.8e-80 302.4 523 36.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.7e-78 297.7 516 35.9
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.2e-78 297.4 509 36.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 5.4e-77 292.7 507 37.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.3e-75 288.1 489 35.8
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.8e-72 277.7 535 34.8
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.4e-71 273.5 503 36.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.2e-69 265.4 508 36.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.5e-66 258.1 480 36.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 5.6e-66 256.1 258 53.9
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.6e-65 253.4 535 34.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.1e-64 251.9 529 34.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.2e-63 248.4 524 33.4
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 3.4e-63 246.9 296 43.2
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.8e-63 246.1 406 37.4
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 9.8e-63 245.4 270 45.9
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 3.7e-62 243.4 285 44.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.9e-62 243.0 503 34.8
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.4e-62 242.7 419 36.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.4e-61 240.7 494 33.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.7e-60 237.3 535 32.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-60 237.3 524 33.8
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 7.8e-60 235.7 268 47.4
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 5.1e-59 233.0 501 32.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.6e-59 232.3 524 31.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.3e-58 229.2 532 32.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.7e-57 226.5 490 32.9
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.7e-57 226.5 490 32.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.1e-57 225.7 240 48.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-56 224.9 513 32.9
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.4e-56 224.9 541 32.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.8e-56 224.6 524 31.9
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.3e-56 224.2 505 33.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.9e-56 222.2 497 31.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.2e-55 221.9 498 32.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.2e-55 221.9 500 33.0
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.2e-55 221.9 514 32.3
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.5e-55 221.5 516 30.2
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.5e-55 221.5 523 31.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.6e-55 220.7 496 30.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.4e-55 220.3 522 31.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 7.6e-55 219.2 523 31.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.6e-55 219.2 504 31.0
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 9.9e-55 218.8 497 31.0
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.9e-54 216.5 523 31.7
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 5.4e-53 213.0 522 32.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 5.4e-53 213.0 496 31.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 5.4e-53 213.0 523 33.5
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.1e-53 212.6 499 30.1
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.6e-52 211.5 522 29.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.1e-52 211.1 477 31.9
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.1e-52 211.1 254 43.7
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.0e-51 207.2 518 29.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.0e-51 207.2 518 29.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 5.1e-51 206.5 493 33.1
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.1e-50 205.3 493 29.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.1e-50 205.3 491 31.0
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.5e-50 204.9 422 35.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.5e-50 204.1 527 30.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 5.6e-50 203.0 384 34.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 7.3e-50 202.6 387 35.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.1e-48 197.2 458 33.6
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.9e-48 195.7 384 33.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 8.9e-48 195.7 507 30.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.6e-47 194.1 499 31.3
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 4.9e-46 189.9 405 32.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.4e-45 186.4 493 28.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.1e-45 186.0 514 32.3
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.3e-45 185.7 432 29.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.2e-44 185.3 525 28.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 7.8e-44 182.6 543 27.4
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.0e-43 182.2 267 40.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.7e-43 181.4 262 38.2
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 9.6e-42 175.6 550 28.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.3e-41 175.3 405 30.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-41 173.7 248 40.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 6.2e-41 172.9 410 31.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.1e-40 170.6 488 28.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.3e-40 169.9 501 28.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.0e-40 169.1 252 42.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.3e-38 165.2 257 37.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.9e-37 161.4 586 29.2
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.4e-37 161.0 524 30.3
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.2e-37 160.6 485 28.7
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 4.6e-36 156.8 410 31.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 6.0e-36 156.4 491 28.1
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.3e-35 154.5 253 40.3
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 9.6e-34 149.1 296 36.8
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.3e-33 148.7 539 28.6
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 8.1e-33 146.0 181 45.3
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 6.9e-32 142.9 513 27.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-31 142.1 455 27.0
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.5e-31 141.7 525 25.1
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.6e-31 141.0 463 27.4
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 5.8e-31 139.8 162 46.3
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.7e-30 138.3 451 27.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.9e-30 137.5 456 27.2
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 4.9e-30 136.7 479 26.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.9e-30 136.7 259 39.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.4e-30 136.3 269 36.4
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-29 135.2 480 26.2
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.4e-29 133.3 455 27.0
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 2.1e-25 121.3 121 57.0
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.7e-25 120.6 476 26.1
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.4e-23 114.0 278 29.9
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.5e-22 109.8 258 30.6
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 6.5e-22 109.8 125 43.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.7e-19 99.8 224 33.5
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.7e-18 96.7 273 28.9
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.6e-17 95.1 163 36.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 8.2e-17 92.8 116 37.9
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 4.5e-15 87.0 250 28.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-14 85.9 270 29.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-14 85.1 193 33.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.5e-13 81.3 152 38.2
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.5e-13 81.3 237 30.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.0e-11 75.9 274 26.6
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.3e-10 70.9 145 33.8
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-08 65.9 139 31.7


User provided reference genes

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