Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 6.4e-138 495.4 602 100.0
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.9e-83 312.8 608 79.3
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 2.2e-82 310.8 608 79.3
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 7.9e-80 302.4 611 81.5
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 8.8e-79 298.9 611 79.5
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 5.7e-78 296.2 602 79.7
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 1.3e-77 295.0 565 84.8
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.4e-76 291.6 604 84.1
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 6.9e-76 289.3 634 75.4
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 9.1e-76 288.9 609 83.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.4e-73 281.6 606 80.0
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.2e-72 278.5 230 66.5
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.1e-68 265.4 594 80.6
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 2.2e-66 257.7 598 77.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 2.9e-66 257.3 602 78.7
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 3.8e-66 256.9 619 75.1
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.6e-64 250.4 609 78.2
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.6e-64 250.4 609 78.2
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.0e-63 248.8 609 79.1
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.7e-61 241.5 602 79.2
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.8e-61 240.7 551 82.6
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 6.3e-61 239.6 602 78.4
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.3e-60 236.5 602 76.2
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 9.1e-60 235.7 625 75.8
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 9.1e-60 235.7 609 74.9
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.2e-59 235.3 612 75.0
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 3.5e-59 233.8 603 76.9
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 4.5e-59 233.4 617 75.4
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.5e-59 233.4 613 74.9
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 7.7e-59 232.6 603 76.9
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.3e-58 231.9 536 82.1
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.2e-58 231.1 615 75.9
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 8.5e-58 229.2 600 78.2
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.5e-57 228.4 600 76.5
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 5.5e-57 226.5 602 76.4
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 9.4e-57 225.7 607 77.1
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.7e-56 224.2 613 56.3
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 6.1e-56 223.0 588 79.3
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.4e-55 221.9 574 77.0
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 4.0e-55 220.3 552 78.8
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 4.0e-55 220.3 620 73.7
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 5.2e-55 219.9 557 81.1
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.2e-54 218.8 620 73.7
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 7.5e-54 216.1 607 73.8
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 9.8e-54 215.7 606 76.6
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 9.8e-54 215.7 614 74.1
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.7e-53 214.9 552 79.3
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 3.7e-53 213.8 613 74.4
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.1e-52 210.3 604 70.4
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 4.1e-52 210.3 566 76.7
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 3.5e-51 207.2 559 80.5
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 7.7e-51 206.1 608 76.2
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.0e-50 205.7 597 74.0
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.7e-50 204.9 597 73.9
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 2.9e-50 204.1 610 75.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 5.0e-50 203.4 559 80.3
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 6.5e-50 203.0 226 55.8
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 8.6e-50 202.6 186 58.1
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.5e-49 201.8 557 80.4
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.9e-49 201.4 557 80.6
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.9e-49 201.4 557 80.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.2e-49 200.3 538 79.2
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 5.5e-49 199.9 559 79.4
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 1.6e-48 198.4 562 79.9
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 1.6e-48 198.4 562 79.9
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.6e-48 198.4 189 61.9
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.6e-48 197.2 195 59.0
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.8e-47 194.9 167 62.9
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 3.0e-47 194.1 227 52.9
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 3.0e-47 194.1 638 60.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.6e-46 191.0 552 77.4
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 5.7e-46 189.9 180 56.7
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 9.8e-46 189.1 235 49.8
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.3e-45 188.7 619 71.2
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.3e-45 188.7 189 60.3
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.7e-45 188.3 177 58.8
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 1.7e-45 188.3 555 66.1
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.2e-45 188.0 168 58.9
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.9e-45 186.8 187 57.8
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 6.3e-45 186.4 545 77.8
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.4e-44 185.3 241 49.8
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 4.5e-43 180.3 225 49.8
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.9e-42 177.6 537 68.5
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 5.0e-42 176.8 166 57.8
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 8.6e-42 176.0 488 86.5
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.5e-41 175.3 568 64.3
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.2e-40 172.2 606 72.3
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.1e-40 171.4 550 75.3
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.0e-39 169.1 267 43.1
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.8e-39 168.3 216 45.8
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 2.3e-39 167.9 214 48.1
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.0e-39 167.5 234 47.9
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 6.8e-39 166.4 467 88.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 4.4e-38 163.7 194 52.1
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 5.7e-38 163.3 175 57.1
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 5.7e-38 163.3 194 51.5
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 6.4e-37 159.8 217 45.6
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 6.4e-37 159.8 218 45.9
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 2.7e-35 154.5 206 47.1
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 7.8e-35 152.9 544 72.4
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.0e-34 152.5 121 66.1
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.0e-34 152.5 663 67.1
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 4.3e-33 147.1 220 44.5
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 5.6e-33 146.7 137 57.7
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 6.2e-32 143.3 121 62.8
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 7.5e-30 136.3 180 47.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-29 135.6 182 50.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-29 135.6 182 50.0
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.4e-28 132.1 163 48.5
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 5.0e-26 123.6 594 69.2
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 8.9e-23 112.8 551 72.1
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-20 105.5 91 80.2
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 6.0e-19 100.1 90 77.8
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.0e-14 85.1 166 39.2
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.6e-14 84.7 48 85.4
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 3.4e-14 84.3 58 67.2
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 4.4e-14 84.0 158 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 7.6e-14 83.2 151 37.1
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.1e-12 79.3 131 40.5
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 7.1e-12 76.6 83 72.3
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 1.1e-09 69.3 51 62.7
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.2e-08 63.5 202 30.7
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.2e-08 63.5 202 30.7
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 8.1e-08 63.2 84 65.5
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.4e-07 62.4 62 46.8


User provided reference genes

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