Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 3.2e-66 255.4 172 100.0
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 8.4e-35 151.0 138 62.3
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 5.5e-34 148.3 182 51.1
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 9.3e-34 147.5 136 64.0
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 1.5e-31 140.2 156 62.2
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 3.7e-30 135.6 137 58.4
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 4.5e-28 128.6 182 49.5
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 5.0e-27 125.2 134 60.4
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 3.3e-23 112.5 105 56.2
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 1.4e-21 107.1 144 48.6
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 6.9e-21 104.8 110 53.6
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 5.9e-20 101.7 141 49.6
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 5.9e-20 101.7 94 58.5
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.0e-19 100.9 121 52.1
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 1.7e-19 100.1 121 51.2
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 1.7e-19 100.1 113 49.6
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.2e-19 99.8 94 59.6
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.8e-19 99.0 121 49.6
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.8e-19 99.0 97 56.7
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 6.5e-19 98.2 94 57.4
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.5e-19 98.2 121 52.1
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.1e-18 97.4 100 54.0
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.9e-18 96.7 107 50.5
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.2e-18 95.9 111 49.5
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 5.5e-18 95.1 121 48.8
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 5.5e-18 95.1 96 56.2
TPR.G21100 Trifolium pratense HOM05D007558 ORTHO05D009245 9.4e-18 94.4 83 67.5
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.2e-17 94.0 111 49.5
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 1.2e-17 94.0 109 50.5
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.6e-17 93.6 106 46.2
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 1.6e-17 93.6 107 49.5
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 2.1e-17 93.2 106 50.0
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-17 93.2 91 54.9
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-17 93.2 91 54.9
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.1e-17 93.2 91 54.9
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 2.1e-17 93.2 110 49.1
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 6.1e-17 91.7 86 55.8
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 6.1e-17 91.7 122 49.2
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 1.0e-16 90.9 107 46.7
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 1.8e-16 90.1 92 58.7
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 1.8e-16 90.1 133 46.6
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 1.8e-16 90.1 120 48.3
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 6.7e-16 88.2 119 47.1
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 6.7e-16 88.2 105 51.4
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 6.7e-16 88.2 121 46.3
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 8.8e-16 87.8 109 42.2
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 1.5e-15 87.0 134 42.5
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.5e-15 87.0 105 42.9
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 3.3e-15 85.9 108 46.3
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 3.3e-15 85.9 126 44.4
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 4.4e-15 85.5 104 46.2
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.3e-14 84.0 88 53.4
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.7e-14 83.6 88 52.3
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 2.8e-14 82.8 97 49.5
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 3.7e-14 82.4 114 43.0
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 4.8e-14 82.0 146 37.7
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 1.8e-13 80.1 101 45.5
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 1.8e-13 80.1 114 44.7
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 2.4e-13 79.7 99 50.5
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 2.4e-13 79.7 131 38.9
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 3.1e-13 79.3 81 55.6
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 5.3e-13 78.6 105 46.7
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 5.3e-13 78.6 76 55.3
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 9.1e-13 77.8 94 45.7
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 1.2e-12 77.4 113 41.6
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.2e-12 77.4 109 40.4
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 1.5e-12 77.0 110 50.0
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 2.0e-12 76.6 123 42.3
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 2.6e-12 76.3 95 49.5
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 2.6e-12 76.3 123 42.3
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 4.5e-12 75.5 150 39.3
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 5.9e-12 75.1 124 41.9
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 1.0e-11 74.3 70 54.3
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.7e-11 73.6 89 48.3
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 2.2e-11 73.2 120 42.5
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 2.2e-11 73.2 113 44.2
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 2.9e-11 72.8 98 41.8
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 5.0e-11 72.0 106 41.5
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.1e-10 70.9 117 43.6
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 1.1e-10 70.9 95 41.1
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 1.9e-10 70.1 118 39.0
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 4.2e-10 68.9 132 37.1
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 4.2e-10 68.9 87 51.7
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 5.5e-10 68.6 82 45.1
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 9.4e-10 67.8 114 42.1
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 9.4e-10 67.8 95 41.1
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 3.6e-09 65.9 100 41.0
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 3.6e-09 65.9 126 37.3
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 1.4e-08 63.9 103 40.8
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 1.4e-08 63.9 106 39.6
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 1.8e-08 63.5 86 46.5
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 1.8e-08 63.5 105 39.0
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 2.3e-08 63.2 99 43.4
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 2.3e-08 63.2 99 38.4
Gorai.005G181900 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.0e-08 62.8 100 44.0
Nitab4.5_0000203g0180 Nicotiana tabacum HOM05D020724 ORTHO05D025910 3.0e-08 62.8 80 50.0
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 5.2e-08 62.0 105 40.0
Psat2g104560 Pisum sativum HOM05D007558 ORTHO05D009245 6.7e-08 61.6 44 75.0
MSTRG.591 Avicennia marina HOM05D007558 ORTHO05D009245 2.6e-07 59.7 105 41.0
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 2.6e-07 59.7 106 41.5
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 4.4e-07 58.9 96 37.5
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 4.4e-07 58.9 96 37.5
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 4.4e-07 58.9 183 30.6
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 9.7e-07 57.8 182 30.2
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.3e-06 57.4 96 37.5
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 1.7e-06 57.0 144 31.2
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.7e-06 57.0 51 60.8
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 2.8e-06 56.2 80 42.5
Os02g0708000 Oryza sativa ssp. japonica HOM05D022024 ORTHO05D030312 6.3e-06 55.1 90 37.8
unitig_8.g3942 Utricularia gibba HOM05D007558 ORTHO05D009245 6.3e-06 55.1 68 45.6


User provided reference genes

Program Settings