Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 4.0e-96 354.8 180 100.0
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.4e-61 240.0 187 71.7
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 5.1e-59 231.5 187 68.4
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.3e-57 226.9 187 68.4
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 5.3e-56 221.5 191 63.9
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 6.9e-56 221.1 191 63.9
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 1.2e-55 220.3 190 65.3
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.2e-55 220.3 191 66.0
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 1.5e-55 219.9 191 65.4
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-55 219.9 191 63.9
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.0e-55 219.5 190 66.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.6e-55 219.2 191 64.9
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 3.8e-54 215.3 192 63.0
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.6e-52 209.9 191 63.4
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 6.7e-51 204.5 187 61.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 4.8e-49 198.4 195 60.5
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 4.8e-49 198.4 196 58.2
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.8e-48 196.4 192 59.9
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.2e-47 193.7 206 55.8
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 2.0e-47 193.0 201 59.7
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.6e-47 192.6 199 57.3
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.5e-47 191.8 199 59.8
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 4.5e-47 191.8 199 57.3
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 4.5e-47 191.8 197 56.9
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 5.9e-47 191.4 199 57.3
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.0e-46 190.7 200 56.0
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.3e-46 190.3 199 55.8
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.3e-46 190.3 203 56.2
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.7e-46 189.9 201 57.7
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 3.8e-46 188.7 205 55.1
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 8.5e-46 187.6 185 59.5
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 4.2e-45 185.3 185 58.9
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 4.2e-45 185.3 194 57.7
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 7.2e-45 184.5 195 56.4
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.2e-44 183.7 198 57.6
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.2e-44 183.7 200 55.0
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 6.1e-44 181.4 179 58.1
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.0e-43 180.6 147 64.6
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 3.0e-43 179.1 196 54.6
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.0e-43 179.1 191 54.5
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 3.0e-43 179.1 190 55.8
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 3.0e-43 179.1 200 54.5
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 3.0e-43 179.1 198 54.0
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 4.0e-43 178.7 196 55.6
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 5.2e-43 178.3 165 61.8
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 6.7e-43 177.9 166 60.2
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 8.8e-43 177.6 148 62.8
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 1.2e-42 177.2 191 55.5
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.0e-42 176.4 194 53.1
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.6e-42 176.0 138 68.1
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.6e-42 176.0 203 53.2
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.6e-42 176.0 136 69.1
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.4e-42 175.3 136 66.9
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 4.4e-42 175.3 168 58.3
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 5.7e-42 174.9 168 57.7
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 9.7e-42 174.1 202 53.5
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 9.7e-42 174.1 136 66.9
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 9.7e-42 174.1 136 66.9
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 1.3e-41 173.7 136 66.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 1.3e-41 173.7 190 54.2
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.3e-41 173.7 138 65.2
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.7e-41 173.3 162 59.3
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.2e-41 172.9 191 55.5
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 3.7e-41 172.2 178 55.6
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 6.3e-41 171.4 143 61.5
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 8.2e-41 171.0 192 58.3
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 8.2e-41 171.0 203 53.2
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.4e-40 170.2 136 66.2
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.8e-40 169.9 176 56.2
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 2.4e-40 169.5 193 53.9
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 3.1e-40 169.1 196 52.0
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 3.1e-40 169.1 197 52.3
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.1e-40 169.1 159 57.9
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 3.1e-40 169.1 193 53.9
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 4.1e-40 168.7 196 52.0
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 4.1e-40 168.7 194 53.6
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.3e-40 168.3 166 57.2
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 7.0e-40 167.9 193 53.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 9.1e-40 167.5 166 57.2
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.2e-39 167.2 150 59.3
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.0e-39 166.4 138 62.3
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 2.0e-39 166.4 171 56.7
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 3.5e-39 165.6 204 51.0
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 5.9e-39 164.9 148 58.1
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 5.9e-39 164.9 179 53.6
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 1.0e-38 164.1 192 53.1
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 1.7e-38 163.3 197 51.3
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.2e-38 162.9 138 60.9
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 2.9e-38 162.5 207 49.8
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 3.8e-38 162.2 197 50.8
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.0e-38 161.8 183 52.5
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 5.0e-38 161.8 124 69.4
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 6.5e-38 161.4 191 52.9
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 6.5e-38 161.4 135 62.2
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.5e-37 159.5 192 53.6
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.2e-37 159.1 138 58.7
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 7.2e-37 157.9 179 49.7
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.2e-36 157.1 191 47.6
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 2.1e-36 156.4 144 58.3
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 8.0e-36 154.5 191 47.1
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.4e-35 153.7 193 50.8
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.4e-35 153.7 193 50.8
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.0e-34 149.8 143 53.8
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.6e-34 149.4 171 50.9
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.4e-34 148.7 193 50.3
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 1.3e-33 147.1 194 50.0
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 2.2e-33 146.4 110 70.9
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.8e-33 146.0 143 52.4
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 3.7e-33 145.6 156 53.2
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 3.7e-33 145.6 190 45.8
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 9.1e-32 141.0 146 55.5
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 1.2e-31 140.6 146 56.8
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 3.5e-31 139.0 187 44.4
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 3.8e-30 135.6 168 47.0
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 6.5e-30 134.8 138 52.9
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.6e-28 130.2 139 53.2
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 6.1e-28 128.3 170 45.9
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 5.2e-27 125.2 154 50.0
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 5.4e-24 115.2 156 47.4
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.7e-22 110.2 165 43.0
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 7.3e-21 104.8 130 46.2
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 9.2e-16 87.8 137 43.1
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 1.7e-14 83.6 88 55.7
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.3e-13 79.0 74 58.1
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 1.6e-12 77.0 88 52.3
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.6e-12 77.0 74 56.8
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 8.0e-12 74.7 125 40.0
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 4.0e-11 72.4 125 36.0
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 6.8e-11 71.6 92 46.7
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 6.8e-11 71.6 74 54.1
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 9.2e-08 61.2 117 37.6


User provided reference genes

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