Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 8.7e-169 597.0 338 100.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 1.6e-101 373.6 311 65.6
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 3.5e-101 372.5 311 68.2
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.7e-95 353.6 322 63.0
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-95 353.2 315 63.8
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 2.9e-95 352.8 313 66.1
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 5.4e-94 348.6 322 60.6
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.3e-91 339.0 322 61.2
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 1.2e-90 337.4 244 72.1
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 1.2e-90 337.4 324 62.3
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 8.1e-90 334.7 326 61.0
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.4e-89 334.0 324 60.5
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.4e-89 334.0 319 57.7
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 4.0e-89 332.4 315 59.4
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 4.0e-89 332.4 282 62.4
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 5.8e-88 328.6 311 57.2
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 9.9e-88 327.8 242 68.2
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 1.3e-87 327.4 278 63.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 1.3e-87 327.4 242 69.8
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.3e-87 327.4 240 68.3
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 2.2e-87 326.6 246 67.5
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 4.9e-87 325.5 318 55.3
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 6.4e-87 325.1 314 57.6
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 1.4e-86 323.9 233 69.1
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.4e-86 323.2 320 54.7
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.2e-86 322.8 309 60.8
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 5.4e-86 322.0 229 69.9
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 9.3e-86 321.2 305 60.3
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 1.2e-85 320.9 239 69.9
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 2.1e-85 320.1 237 68.8
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 3.5e-85 319.3 309 55.7
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 4.6e-85 318.9 340 58.2
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 6.0e-85 318.5 307 59.9
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 1.0e-84 317.8 320 59.1
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.3e-84 317.4 237 67.1
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.7e-84 317.0 237 67.1
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.3e-84 316.6 317 58.4
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 3.9e-84 315.8 243 63.8
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 8.7e-84 314.7 240 67.1
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.9e-83 313.5 237 66.2
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.9e-83 313.5 228 66.7
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 3.3e-83 312.8 230 70.4
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 4.3e-83 312.4 332 57.8
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 5.6e-83 312.0 316 55.1
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 5.6e-83 312.0 236 63.6
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 7.3e-83 311.6 226 69.0
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 9.6e-83 311.2 337 55.2
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.6e-82 310.5 314 57.3
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 2.1e-82 310.1 247 63.6
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 2.1e-82 310.1 247 63.6
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 2.8e-82 309.7 224 67.9
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.8e-82 309.7 243 63.4
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 4.8e-82 308.9 242 63.6
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 8.1e-82 308.1 310 57.1
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 1.1e-81 307.8 326 55.5
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.4e-81 307.4 312 55.4
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 1.8e-81 307.0 233 66.5
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 1.8e-81 307.0 320 54.4
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.4e-81 306.6 226 67.3
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 2.4e-81 306.6 342 55.8
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 4.0e-81 305.8 321 55.8
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 5.3e-81 305.4 231 65.4
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 5.3e-81 305.4 322 55.3
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 2.6e-80 303.1 233 64.8
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 2.6e-80 303.1 251 63.7
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.5e-80 302.4 323 56.0
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 7.6e-80 301.6 229 65.9
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.7e-79 300.4 253 62.8
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 6.4e-79 298.5 223 65.0
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 6.4e-79 298.5 313 53.0
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 8.4e-79 298.1 239 64.0
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.2e-78 296.2 345 53.9
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 4.2e-78 295.8 353 54.4
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 9.3e-78 294.7 222 65.8
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.2e-77 294.3 338 54.4
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.6e-77 293.9 338 53.8
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.1e-77 293.5 232 62.9
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 2.7e-77 293.1 314 57.0
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.5e-77 292.7 312 54.8
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.0e-76 291.2 313 52.7
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 1.3e-76 290.8 245 62.9
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 3.0e-76 289.7 269 58.7
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 5.1e-76 288.9 313 54.0
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.9e-75 287.0 229 62.0
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 2.5e-75 286.6 319 53.0
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 2.5e-75 286.6 220 65.9
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 3.3e-75 286.2 314 53.8
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 7.4e-75 285.0 312 52.2
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.6e-74 283.9 222 64.9
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 9.0e-73 278.1 232 60.3
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 9.0e-73 278.1 275 53.8
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 3.4e-72 276.2 255 58.8
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.4e-72 276.2 277 54.5
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 9.9e-72 274.6 224 62.1
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 8.4e-71 271.6 198 67.7
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 2.1e-69 266.9 223 61.0
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 1.8e-68 263.8 342 44.7
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 6.7e-68 261.9 227 60.8
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 5.6e-67 258.8 204 65.2
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 2.6e-64 250.0 295 47.5
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 3.5e-61 239.6 214 56.1
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 1.1e-59 234.6 227 59.0
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 9.7e-59 231.5 226 55.3
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 9.7e-59 231.5 259 49.8
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.5e-56 224.2 183 60.1
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 2.9e-55 219.9 150 72.0
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 4.2e-54 216.1 221 52.9
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.6e-53 214.2 214 51.9
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 2.7e-53 213.4 191 58.1
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 5.1e-52 209.1 146 69.9
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 6.3e-50 202.2 244 48.0
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 1.8e-49 200.7 241 49.0
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.1e-45 187.2 216 47.7
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.3e-42 177.9 243 46.1
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.4e-41 174.5 147 59.9
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 5.0e-39 166.0 217 46.1
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 5.0e-39 166.0 217 46.1
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 2.5e-38 163.7 223 42.2
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.7e-31 141.0 85 82.4
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 2.9e-31 140.2 200 41.0
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.7e-24 117.1 95 62.1
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.7e-23 114.4 184 40.8
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 2.9e-23 113.6 216 34.7
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 1.4e-09 68.2 150 29.3
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.1e-09 66.6 81 45.7
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 8.6e-07 58.9 126 28.6


User provided reference genes

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