Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 6.4e-67 257.7 173 100.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.1e-53 212.2 173 74.6
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.0e-51 207.2 173 85.5
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.3e-51 206.8 173 84.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.2e-50 202.2 173 71.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 6.7e-48 194.5 173 85.0
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.7e-47 191.4 173 71.7
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 6.3e-46 188.0 173 79.2
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 6.3e-46 188.0 173 79.2
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 8.2e-46 187.6 173 82.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 4.1e-45 185.3 171 66.1
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.1e-45 185.3 171 66.1
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.1e-45 185.3 171 66.1
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.9e-45 184.5 171 67.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 9.0e-45 184.1 173 78.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.0e-44 183.0 171 80.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.4e-44 182.2 174 73.6
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.9e-44 181.4 171 65.5
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.0e-43 180.6 167 69.5
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.2e-43 179.5 177 53.7
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.2e-43 179.5 174 81.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.9e-43 179.1 165 68.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 5.0e-43 178.3 172 79.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 8.5e-43 177.6 165 67.3
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.9e-42 176.4 173 78.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.5e-42 176.0 174 77.6
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.5e-42 176.0 174 78.2
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.2e-42 175.3 166 80.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.5e-42 174.9 166 80.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 5.5e-42 174.9 166 80.1
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.6e-41 173.3 165 67.9
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.6e-41 171.8 171 63.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.3e-40 169.5 173 65.3
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 3.0e-40 169.1 175 75.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.9e-40 168.7 167 67.1
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.0e-39 166.4 167 79.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.3e-39 165.6 175 64.6
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.3e-39 165.2 168 62.5
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 4.3e-39 165.2 165 64.2
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.7e-38 163.3 167 76.6
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.7e-38 162.2 182 73.1
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.7e-38 162.2 165 78.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.8e-37 159.8 168 72.6
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 4.1e-37 158.7 169 63.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 5.3e-37 158.3 172 63.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 5.3e-37 158.3 165 63.6
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 169 75.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 169 75.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 6.9e-37 157.9 162 78.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 9.1e-37 157.5 160 64.4
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 9.1e-37 157.5 160 71.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.2e-36 157.1 175 62.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.5e-36 156.8 167 67.1
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 3.4e-36 155.6 171 69.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 3.4e-36 155.6 173 71.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 4.5e-36 155.2 176 59.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 7.7e-36 154.5 160 75.6
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.7e-36 154.5 167 63.5
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.0e-35 154.1 171 70.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 72.9
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 172 70.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.9e-35 152.5 173 59.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.9e-35 152.5 164 75.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.8e-35 152.1 158 62.0
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.5e-35 151.4 165 73.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 8.5e-35 151.0 172 59.9
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 8.5e-35 151.0 169 71.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.1e-34 150.6 159 76.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.9e-34 149.8 158 58.9
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.9e-34 149.8 158 76.6
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.5e-34 149.4 158 61.4
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.5e-34 149.4 173 60.1
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.2e-34 149.1 161 73.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 4.2e-34 148.7 174 59.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.5e-34 148.3 168 58.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 5.5e-34 148.3 174 66.7
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.5e-34 148.3 165 60.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 7.2e-34 147.9 147 79.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.1e-33 146.4 165 71.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.1e-33 146.4 167 64.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.1e-33 146.4 166 62.0
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.7e-33 146.0 165 72.1
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.7e-33 146.0 167 49.7
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 3.6e-33 145.6 176 69.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 6.1e-33 144.8 173 58.4
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.0e-32 144.1 153 51.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-32 144.1 153 51.0
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.8e-32 143.3 170 57.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.3e-32 142.9 170 69.4
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.3e-32 142.9 153 50.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.9e-32 142.1 177 67.8
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.9e-32 142.1 165 71.5
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.9e-32 142.1 167 66.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.9e-32 142.1 173 71.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.1e-32 141.7 177 67.8
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.1e-32 141.7 169 70.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.8e-32 141.0 173 57.2
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.0e-31 139.8 158 63.3
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.0e-31 139.8 177 59.3
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-31 139.4 149 49.7
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.4e-31 138.7 156 69.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.4e-31 138.7 179 55.3
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 7.4e-31 137.9 176 68.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 9.7e-31 137.5 165 46.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-30 136.7 155 60.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.2e-30 136.3 176 63.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 142 68.3
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 67.6
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 3.7e-30 135.6 160 70.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.7e-30 135.6 160 70.6
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 6.3e-30 134.8 173 56.6
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 6.3e-30 134.8 173 56.6
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-29 134.0 230 37.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 173 56.6
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.1e-29 132.5 155 57.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 4.1e-29 132.1 177 54.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 4.1e-29 132.1 178 66.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 5.3e-29 131.7 178 65.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 5.3e-29 131.7 178 65.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 7.0e-29 131.3 178 66.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.0e-29 131.3 173 55.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-28 129.8 179 64.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.6e-28 129.4 142 62.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.5e-28 128.6 175 54.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 5.9e-28 128.3 167 54.5
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 5.9e-28 128.3 167 54.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 5.9e-28 128.3 167 54.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.9e-27 125.9 158 55.7
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.0e-27 125.2 160 44.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 8.5e-27 124.4 176 52.8
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.2e-26 122.1 165 46.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.6e-25 120.2 129 65.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.0e-24 117.5 155 69.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.0e-24 115.9 150 54.0
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.8e-24 114.4 148 53.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.3e-23 112.5 143 71.3
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 4.4e-23 112.1 129 66.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 3.7e-22 109.0 126 61.1
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.9e-20 101.7 86 59.3
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.7e-19 100.1 128 60.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.7e-19 100.1 120 64.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 8.5e-19 97.8 116 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 4.7e-17 92.0 117 40.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.0e-16 90.9 152 50.7
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 8.8e-16 87.8 85 50.6
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 2.6e-15 86.3 101 67.3
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.3e-14 84.0 101 65.3
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-13 80.9 91 68.1
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.7e-11 73.6 46 69.6
arahy.Tifrunner.gnm1.ann1.6NYM2I Arachis hypogaea HOM05D000336 ORTHO05D023213 2.1e-09 66.6 44 65.9
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 5.2e-08 62.0 48 56.2
arahy.Tifrunner.gnm1.ann1.UP5F84 Arachis hypogaea HOM05D019517 ORTHO05D023213 8.8e-08 61.2 45 68.9


User provided reference genes

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