Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015752 Lotus japonicus HOM05D007672 ORTHO05D009617 1.3e-51 206.1 103 100.0
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 5.0e-43 177.6 103 86.4
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 2.8e-25 118.6 89 65.2
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 2.6e-23 112.1 86 65.1
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 1.7e-22 109.4 85 64.7
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 1.7e-22 109.4 85 63.5
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 3.6e-17 91.7 87 57.5
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 6.2e-17 90.9 88 54.5
Psat6g051280 Pisum sativum HOM05D007672 ORTHO05D009617 7.8e-12 73.9 58 63.8
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 7.8e-12 73.9 88 45.5
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 2.3e-11 72.4 83 51.8
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 3.0e-11 72.0 85 49.4
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 3.9e-11 71.6 82 47.6
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 1.1e-10 70.1 88 45.5
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 3.3e-10 68.6 84 44.0
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 4.3e-10 68.2 98 38.8
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 9.6e-10 67.0 84 44.0
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 1.3e-09 66.6 90 43.3
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.3e-09 66.6 90 43.3
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 1.3e-09 66.6 88 48.9
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 1.3e-09 66.6 88 43.2
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 2.1e-09 65.9 84 45.2
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 4.8e-09 64.7 96 38.5
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 6.2e-09 64.3 87 39.1
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 6.2e-09 64.3 90 46.7
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 8.1e-09 63.9 101 38.6
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 8.1e-09 63.9 84 42.9
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 8.1e-09 63.9 84 42.9
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 1.4e-08 63.2 99 39.4
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 1.8e-08 62.8 87 40.2
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 4.0e-08 61.6 96 39.6
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 9.0e-08 60.5 85 43.5
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 1.5e-07 59.7 82 42.7
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 1.5e-07 59.7 86 40.7
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 2.6e-07 58.9 87 35.6
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 2.6e-07 58.9 90 43.3
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 2.6e-07 58.9 89 38.2
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 3.4e-07 58.5 83 41.0
MD13G1018900 Malus domestica HOM05D007672 ORTHO05D009617 3.4e-07 58.5 80 42.5
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 4.5e-07 58.2 88 38.6
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 4.5e-07 58.2 91 41.8
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 5.8e-07 57.8 99 36.4
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 5.8e-07 57.8 84 40.5
GSVIVG01008479001 Vitis vinifera HOM05D007672 ORTHO05D009617 5.8e-07 57.8 59 54.2
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 7.6e-07 57.4 89 38.2
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 7.6e-07 57.4 89 38.2
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 7.6e-07 57.4 89 39.3
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 7.6e-07 57.4 94 39.4
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 9.9e-07 57.0 91 42.9
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 9.9e-07 57.0 50 58.0
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 9.9e-07 57.0 83 43.4
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 1.3e-06 56.6 42 59.5
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 1.7e-06 56.2 82 39.0
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 1.7e-06 56.2 84 42.9
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 2.2e-06 55.8 87 37.9
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 2.2e-06 55.8 87 37.9
Gohir.A12G270800 Gossypium hirsutum HOM05D007672 ORTHO05D009617 2.2e-06 55.8 86 39.5
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 2.2e-06 55.8 86 39.5
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 2.9e-06 55.5 50 52.0
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 3.8e-06 55.1 89 37.1
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 4.9e-06 54.7 87 36.8
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 6.4e-06 54.3 50 56.0
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 8.4e-06 53.9 82 37.8
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 8.4e-06 53.9 93 36.6
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 8.4e-06 53.9 91 40.7
Sabra12G0030500 Salix brachista HOM05D000154 ORTHO05D009617 8.4e-06 53.9 50 50.0


User provided reference genes

Program Settings