Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 8.6e-182 640.2 324 100.0
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 6.9e-155 550.8 314 86.9
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 7.6e-154 547.4 331 84.6
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 8.7e-150 533.9 327 83.8
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.9e-149 532.7 305 86.9
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 1.4e-147 526.6 327 82.6
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 1.8e-142 509.6 324 81.5
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 2.3e-142 509.2 324 81.2
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 4.2e-128 461.8 247 90.7
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 3.6e-127 458.8 327 71.6
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 3.0e-126 455.7 315 72.4
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.0e-125 453.0 327 72.2
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.7e-124 449.9 309 74.8
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 1.8e-123 446.4 268 81.7
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 5.9e-122 441.4 321 70.1
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 7.7e-122 441.0 324 70.7
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 7.7e-122 441.0 323 70.9
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 7.7e-122 441.0 322 70.2
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 1.0e-121 440.7 280 79.3
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.3e-121 440.3 267 81.3
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.7e-121 439.9 267 80.9
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 2.2e-121 439.5 261 82.0
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 2.2e-121 439.5 329 71.1
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 5.0e-121 438.3 327 70.6
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 6.5e-121 438.0 327 70.3
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 6.5e-121 438.0 272 79.4
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 6.5e-121 438.0 311 70.7
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 6.5e-121 438.0 323 69.3
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 6.5e-121 438.0 327 70.3
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 8.5e-121 437.6 267 79.8
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.5e-121 437.6 315 71.1
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.1e-120 437.2 275 78.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.4e-120 436.8 327 69.7
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.9e-120 436.4 280 78.6
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.5e-120 436.0 315 70.8
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 3.2e-120 435.6 321 69.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 3.2e-120 435.6 315 70.8
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 5.5e-120 434.9 311 70.4
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 7.2e-120 434.5 266 80.1
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.2e-120 434.5 320 69.7
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.6e-119 433.3 318 70.4
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 2.1e-119 433.0 277 78.7
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.1e-119 433.0 323 68.1
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 3.6e-119 432.2 275 77.5
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 5.2e-118 428.3 328 67.4
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 1.1e-117 427.2 226 91.6
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.6e-117 426.0 340 67.6
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.7e-116 423.3 327 68.5
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.7e-116 423.3 315 70.8
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 2.2e-116 422.9 281 75.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.8e-116 422.5 315 67.9
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 1.1e-115 420.6 317 69.7
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.1e-115 419.1 269 76.6
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 7.0e-115 417.9 332 68.4
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.2e-114 417.2 341 67.4
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 1.6e-114 416.8 274 76.6
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.0e-114 416.4 307 68.1
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 4.5e-114 415.2 258 78.7
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 7.7e-114 414.5 312 68.3
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 7.7e-114 414.5 270 75.6
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 1.7e-113 413.3 277 74.7
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 3.8e-113 412.1 318 69.5
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 5.0e-113 411.8 287 72.1
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 6.5e-113 411.4 276 73.2
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 7.2e-112 407.9 298 69.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 6.1e-111 404.8 276 73.2
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 2.3e-110 402.9 277 72.2
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 5.2e-110 401.7 321 64.5
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 5.2e-110 401.7 321 65.1
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.5e-109 400.2 321 63.9
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 1.3e-108 397.1 329 65.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 1.4e-107 393.7 277 70.8
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 7.0e-107 391.3 311 65.0
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 1.2e-106 390.6 276 73.2
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 3.5e-106 389.0 336 63.1
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 8.0e-103 377.9 254 72.8
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 1.1e-99 367.5 327 62.7
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 5.9e-98 361.7 321 60.4
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 1.6e-95 353.6 292 65.8
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.8e-95 352.8 285 62.1
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 2.0e-93 346.7 318 61.0
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-93 346.3 296 67.9
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-93 346.3 296 67.9
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 4.4e-93 345.5 275 61.1
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 2.7e-90 336.3 308 57.8
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 5.0e-89 332.0 204 78.9
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 3.3e-88 329.3 212 74.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.7e-84 317.0 275 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.0e-77 293.5 244 58.6
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 7.5e-77 291.6 183 82.0
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 3.9e-73 279.3 225 60.9
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 2.6e-69 266.5 201 70.6
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 2.6e-61 240.0 153 78.4
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 3.5e-58 229.6 136 77.2
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 7.6e-53 211.8 237 51.5
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 1.2e-50 204.5 290 40.3
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 6.2e-47 192.2 270 41.5
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 1.5e-45 187.6 153 65.4
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 7.9e-42 175.3 276 35.9
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 7.6e-37 158.7 113 69.0
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 1.3e-36 157.9 98 75.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 6.0e-34 149.1 80 85.0
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 8.7e-25 118.6 306 28.1
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 1.1e-24 118.2 303 27.7
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 7.4e-24 115.5 87 63.2
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 1.2e-21 108.2 93 61.3
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.8e-20 103.2 119 54.6
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 3.6e-18 96.7 103 56.3
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 4.7e-10 69.7 278 25.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.4e-09 68.2 290 27.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 2.3e-09 67.4 298 25.5
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.9e-09 66.6 298 24.8
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 3.9e-09 66.6 298 24.8
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 5.1e-09 66.2 298 25.2
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 5.1e-09 66.2 354 24.9
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 8.8e-09 65.5 302 24.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.1e-08 65.1 298 24.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.1e-08 65.1 298 24.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 2.6e-08 63.9 309 25.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 3.3e-08 63.5 298 24.2
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.3e-08 63.5 339 24.8
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.4e-08 63.2 312 23.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.4e-08 62.4 280 25.0
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 7.4e-08 62.4 280 24.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 9.7e-08 62.0 278 26.6
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 9.7e-08 62.0 359 23.7
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 9.7e-08 62.0 45 71.1
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.3e-07 61.6 305 25.9
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.3e-07 61.6 367 24.5
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.3e-07 61.6 279 25.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-07 61.6 278 26.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.7e-07 61.2 267 24.0
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 2.2e-07 60.8 276 26.1
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.2e-07 60.8 355 23.7
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.8e-07 60.5 281 24.2
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.7e-07 60.1 281 25.3
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 4.8e-07 59.7 315 23.2
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 8.2e-07 58.9 281 23.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 8.2e-07 58.9 277 25.6
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.4e-06 57.4 356 22.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 3.1e-06 57.0 348 24.1
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 4.1e-06 56.6 266 25.9
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 4.1e-06 56.6 256 23.8
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 5.3e-06 56.2 256 26.6
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 7.0e-06 55.8 296 23.6
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 7.0e-06 55.8 254 24.0


User provided reference genes

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