Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 3.2e-170 601.7 302 100.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 3.8e-131 471.9 299 78.6
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 9.3e-130 467.2 306 76.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 8.7e-128 460.7 300 74.7
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 2.2e-123 446.0 303 72.3
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 1.1e-122 443.7 301 74.4
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 1.7e-118 429.9 302 70.9
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 1.7e-118 429.9 302 70.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 4.8e-118 428.3 303 71.9
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.8e-117 426.4 287 73.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 2.9e-91 339.3 229 73.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 3.6e-89 332.4 293 56.0
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.3e-88 329.7 285 57.9
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.5e-87 327.0 292 56.5
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.5e-87 327.0 305 55.4
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 2.0e-87 326.6 294 55.8
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 2.6e-87 326.2 303 55.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 9.8e-87 324.3 289 55.4
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.4e-85 319.7 303 55.1
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 2.4e-85 319.7 302 54.3
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 1.2e-84 317.4 293 54.6
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 2.0e-84 316.6 282 56.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 4.5e-84 315.5 288 54.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 7.7e-84 314.7 282 56.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 1.3e-83 313.9 292 54.1
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.7e-83 313.5 298 52.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.9e-83 312.8 282 55.7
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.8e-83 312.4 308 54.2
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 9.5e-82 307.8 297 52.9
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 2.1e-81 306.6 274 55.8
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 6.1e-81 305.1 288 53.5
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 6.1e-81 305.1 296 53.0
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.0e-80 304.3 281 54.8
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.3e-80 303.1 281 54.4
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 8.9e-80 301.2 273 58.6
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-79 300.8 310 51.0
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-79 300.8 310 51.0
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 2.0e-79 300.1 303 51.8
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 5.7e-79 298.5 306 54.6
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 7.5e-79 298.1 296 52.7
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 9.8e-79 297.7 288 53.5
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.1e-77 294.3 297 52.5
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.1e-77 294.3 294 50.0
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 1.8e-77 293.5 280 53.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 2.4e-77 293.1 288 52.1
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 9.2e-77 291.2 289 52.9
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.0e-76 290.0 288 52.1
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 3.5e-76 289.3 288 52.4
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 7.8e-76 288.1 288 52.1
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.3e-75 286.6 276 52.9
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.9e-74 283.5 276 54.0
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 3.3e-74 282.7 292 49.7
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.6e-74 282.0 291 49.8
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 9.5e-74 281.2 288 50.3
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.2e-73 280.8 228 59.2
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 4.7e-73 278.9 286 50.3
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 4.7e-73 278.9 262 55.0
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 6.2e-73 278.5 266 52.3
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 6.2e-73 278.5 256 55.5
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.8e-72 276.9 281 51.2
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 6.8e-72 275.0 255 53.3
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 6.8e-72 275.0 277 50.5
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.2e-71 274.2 237 58.6
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 2.6e-71 273.1 303 47.5
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 4.9e-70 268.9 276 49.6
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.4e-69 267.3 299 48.2
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.1e-69 265.8 264 52.3
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 9.2e-69 264.6 295 47.8
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 1.6e-68 263.8 302 47.4
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 3.5e-68 262.7 246 54.5
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.3e-67 260.8 316 44.0
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.7e-67 260.4 304 46.4
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 3.9e-67 259.2 315 46.3
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 3.9e-67 259.2 315 46.3
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 5.0e-67 258.8 227 54.2
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 1.1e-66 257.7 303 45.5
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 2.5e-66 256.5 307 46.3
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 3.3e-66 256.1 285 48.4
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 7.3e-66 255.0 314 45.5
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 7.3e-66 255.0 314 45.5
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 2.1e-65 253.4 246 54.5
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.8e-65 253.1 263 49.8
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.6e-65 252.7 281 48.0
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 3.6e-65 252.7 304 45.4
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.6e-65 252.7 299 46.8
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 8.1e-65 251.5 263 48.7
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.1e-64 251.1 317 44.5
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.3e-64 250.0 306 44.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 2.6e-63 246.5 288 44.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.3e-62 244.2 303 46.9
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 5.4e-61 238.8 287 46.3
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 7.8e-60 235.0 278 45.7
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 2.3e-59 233.4 212 58.5
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.3e-58 229.6 216 53.2
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 5.6e-58 228.8 307 43.6
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 2.8e-57 226.5 276 44.9
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 1.4e-56 224.2 274 43.8
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 4.0e-56 222.6 322 41.0
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 8.9e-56 221.5 220 49.5
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.2e-55 221.1 298 44.6
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.6e-55 219.9 202 54.5
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 2.6e-55 219.9 372 34.9
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 7.6e-55 218.4 178 60.1
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 1.7e-54 217.2 198 53.5
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 2.9e-54 216.5 233 49.8
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.2e-53 213.0 227 48.5
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 5.4e-53 212.2 275 44.0
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 6.0e-52 208.8 203 52.7
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 4.4e-47 192.6 200 53.0
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 9.3e-45 184.9 304 38.2
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 7.8e-44 181.8 241 44.0
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 3.0e-43 179.9 175 47.4
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 2.1e-41 173.7 167 50.3
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.8e-41 173.3 293 36.9
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.4e-37 161.0 228 39.5
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 5.4e-37 159.1 178 47.2
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 2.8e-33 146.7 152 52.6
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 2.9e-30 136.7 185 38.9
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 5.6e-26 122.5 238 34.9
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.8e-24 117.5 81 64.2
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 3.7e-17 93.2 283 29.0
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 2.6e-15 87.0 153 38.6
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.3e-14 84.7 111 40.5
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 5.5e-13 79.3 64 64.1
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 7.2e-13 79.0 118 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 6.1e-12 75.9 91 46.2
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.1e-10 71.6 107 33.6
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 2.6e-07 60.5 46 54.3
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 3.4e-07 60.1 39 61.5


User provided reference genes

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