Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1382.1 714 100.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1301.6 714 91.9
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1297.7 714 91.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1291.9 712 90.6
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1282.7 712 91.3
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1266.5 713 91.0
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1265.8 713 90.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1245.0 706 89.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1242.3 701 89.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1241.9 702 88.6
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1238.8 706 88.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 713 87.8
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1231.1 713 87.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1231.1 706 88.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1229.5 712 88.6
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1229.5 712 88.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 711 88.3
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1224.5 706 86.3
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1221.1 707 86.1
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1216.8 713 87.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1216.8 708 86.7
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1216.8 718 86.6
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1213.7 704 86.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1213.4 707 87.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 700 87.6
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1210.3 705 86.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 705 87.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1209.5 706 86.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1208.0 706 87.4
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1206.4 705 86.8
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1201.8 704 86.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1201.8 704 86.1
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1201.4 704 85.2
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1198.7 710 86.2
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1194.1 706 86.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 699 86.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 698 85.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1189.5 708 84.6
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1188.7 699 86.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1187.9 694 86.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1184.5 702 85.0
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1182.5 732 83.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1182.2 703 84.5
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 709 83.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 706 85.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1172.9 699 84.0
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1171.8 705 84.5
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 705 84.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1167.9 696 84.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1166.0 699 83.4
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1165.6 713 84.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1161.7 695 83.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1151.7 714 83.3
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1149.0 706 82.3
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1144.8 709 80.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 709 80.3
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1142.9 695 82.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1142.1 716 82.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1139.0 701 82.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 680 85.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1129.8 708 79.4
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 617 92.7
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1126.7 699 80.7
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 700 81.3
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1125.2 742 79.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1125.2 700 80.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 703 82.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1120.9 700 80.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1120.9 700 80.6
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 700 80.6
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 700 80.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1119.8 700 80.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 699 79.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1119.0 699 81.8
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1114.0 701 79.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 697 80.8
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 700 79.3
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 654 85.8
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 693 80.2
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 708 78.5
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1104.4 708 78.4
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1102.4 706 81.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 698 78.5
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 708 78.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 708 78.2
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 708 78.2
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 726 79.6
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 618 88.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1087.4 702 78.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 706 77.2
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 691 80.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 9.1e-309 1063.1 701 76.6
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.9e-308 1060.4 694 80.1
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 693 77.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 659 81.2
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 658 80.4
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 711 76.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.2e-299 1031.9 688 75.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.2e-299 1031.9 695 75.1
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.8e-296 1022.3 702 73.8
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.3e-294 1016.1 699 73.0
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 4.2e-290 1001.1 695 74.4
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.8e-288 993.8 585 85.6
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-287 993.0 740 72.7
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.4e-287 991.1 647 75.6
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.2e-285 983.4 702 72.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.6e-281 971.5 570 87.0
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 9.8e-279 963.4 541 90.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.2e-261 905.2 734 67.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 7.1e-261 904.0 696 70.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 5.4e-253 877.9 705 66.5
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.1e-240 835.5 527 79.9
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.9e-239 830.5 535 79.1
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-238 830.1 567 73.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.6e-231 805.8 449 92.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 3.9e-211 738.8 671 57.1
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.3e-210 735.7 614 64.8
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.5e-199 698.7 558 70.1
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 9.4e-197 691.0 630 55.2
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 8.2e-193 677.9 403 86.4
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.9e-191 671.8 393 87.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.4e-178 629.0 517 66.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.3e-177 624.8 629 51.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.0e-168 595.1 639 49.3
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-166 590.1 639 49.6
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.6e-158 561.6 401 76.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-141 508.1 627 44.0
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.3e-141 505.4 642 42.4
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.8e-140 503.4 722 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.2e-136 489.6 641 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.0e-134 485.0 624 44.1
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-130 469.5 306 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-110 402.9 399 53.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-107 394.8 399 58.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-107 394.8 246 80.9
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 8.5e-89 332.4 212 76.4
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.0e-73 280.0 225 68.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.5e-58 230.3 129 86.8
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-56 224.6 171 73.1
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.2e-38 163.7 140 57.1
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.6e-31 141.0 78 84.6
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.4e-27 128.3 101 63.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.6e-25 120.2 63 84.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.5e-24 119.0 92 64.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.6e-23 114.4 59 86.4
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.3e-16 90.9 56 78.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.1e-15 88.6 63 76.2
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 8.1e-15 86.7 65 67.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 8.1e-15 86.7 65 67.7
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 3.4e-13 81.3 64 65.6
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.3e-12 79.3 64 65.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 3.1e-06 58.2 30 73.3


User provided reference genes

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