Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015207 Lotus japonicus HOM05D008941 ORTHO05D010842 3.2e-25 117.5 53 100.0
Medtr5g023120 Medicago truncatula HOM05D008941 ORTHO05D010842 8.7e-15 82.8 66 68.2
Nn6g31885 Nelumbo nucifera HOM05D008941 ORTHO05D010842 2.6e-11 71.2 55 54.5
Glyma.11G082100 Glycine max HOM05D008941 ORTHO05D010842 7.6e-11 69.7 56 60.7
FAN23G1674 Fragaria x ananassa HOM05D008941 ORTHO05D010842 1.7e-10 68.6 42 64.3
Lalb_Chr05g0212131 Lupinus albus HOM05D008941 ORTHO05D010842 6.4e-10 66.6 58 62.1
Aqoxy6G01918 Aquilegia oxysepala HOM05D008941 ORTHO05D010842 1.4e-09 65.5 66 48.5
RcHm_v2.0_Chr2g0098221 Rosa chinensis HOM05D008941 ORTHO05D010842 1.4e-09 65.5 61 49.2
Thecc.01G010500 Theobroma cacao HOM05D008941 ORTHO05D010842 1.4e-09 65.5 63 54.0
Sed0000767 Sechium edule HOM05D008941 ORTHO05D010842 1.2e-08 62.4 52 50.0
AL7G15310 Arabidopsis lyrata HOM05D008941 ORTHO05D010842 1.6e-08 62.0 58 53.4
Prupe.7G175900 Prunus persica HOM05D008941 ORTHO05D010842 2.1e-08 61.6 69 44.9
AT4G35783 Arabidopsis thaliana HOM05D008941 ORTHO05D010842 2.7e-08 61.2 59 49.2
BcaNung04352 Brassica carinata HOM05D008941 ORTHO05D010842 2.7e-08 61.2 59 50.8
BcaNung05046 Brassica carinata HOM05D008941 ORTHO05D010842 2.7e-08 61.2 59 50.8
BraA03t15456Z Brassica rapa HOM05D008941 ORTHO05D010842 3.5e-08 60.8 58 51.7
Sp7g33560 Schrenkiella parvula HOM05D008941 ORTHO05D010842 3.5e-08 60.8 59 52.5
COL.COLO4_22503 Corchorus olitorius HOM05D008941 ORTHO05D010842 4.6e-08 60.5 67 53.7
THA.LOC109116896 Tarenaya hassleriana HOM05D008941 ORTHO05D010842 1.0e-07 59.3 54 53.7
BcaNung04354 Brassica carinata HOM05D008941 ORTHO05D010842 1.3e-07 58.9 58 53.4
C01p03270 Brassica napus HOM05D008941 ORTHO05D010842 1.3e-07 58.9 61 47.5
C07p61340 Brassica napus HOM05D008941 ORTHO05D010842 1.3e-07 58.9 58 53.4
BolC7t46560H Brassica oleracea HOM05D008941 ORTHO05D010842 1.3e-07 58.9 58 53.4
CARHR244140 Cardamine hirsuta HOM05D008941 ORTHO05D010842 1.8e-07 58.5 58 50.0
AT3G46613 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 2.3e-07 58.2 39 59.0
Lj5g0008582 Lotus japonicus HOM05D001415 ORTHO05D001075 2.3e-07 58.2 49 51.0
Mapoly0151s0015 Marchantia polymorpha HOM05D008941 ORTHO05D010842 2.3e-07 58.2 65 43.1
BolC1t00313H Brassica oleracea HOM05D008941 ORTHO05D010842 3.0e-07 57.8 59 47.5
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 3.0e-07 57.8 44 50.0
Carub.0007s0446 Capsella rubella HOM05D008941 ORTHO05D010842 5.1e-07 57.0 29 72.4
Thecc.06G221500 Theobroma cacao HOM05D008941 ORTHO05D010842 6.7e-07 56.6 64 42.2
A01p02930 Brassica napus HOM05D008941 ORTHO05D010842 8.7e-07 56.2 60 46.7
BraA01t00276Z Brassica rapa HOM05D008941 ORTHO05D010842 8.7e-07 56.2 60 46.7
MD02G1122600 Malus domestica HOM05D008941 ORTHO05D010842 1.1e-06 55.8 33 60.6
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 1.1e-06 55.8 30 70.0
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 1.9e-06 55.1 41 53.7
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 1.9e-06 55.1 41 53.7
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 1.9e-06 55.1 41 53.7
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 1.9e-06 55.1 41 53.7
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 1.9e-06 55.1 41 53.7
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 2.5e-06 54.7 41 56.1
CSS0009089 Camellia sinensis var. sinensis HOM05D008941 ORTHO05D010842 2.5e-06 54.7 53 50.9
CSS0012780 Camellia sinensis var. sinensis HOM05D008941 ORTHO05D010842 2.5e-06 54.7 53 50.9
Gohir.A05G170700 Gossypium hirsutum HOM05D008941 ORTHO05D010842 2.5e-06 54.7 37 56.8
Gohir.D05G173750 Gossypium hirsutum HOM05D008941 ORTHO05D010842 2.5e-06 54.7 32 62.5
Gorai.009G179000 Gossypium raimondii HOM05D008941 ORTHO05D010842 2.5e-06 54.7 32 62.5
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 2.5e-06 54.7 55 45.5
Lsat_1_v5_gn_4_141861 Lactuca sativa HOM05D008941 ORTHO05D010842 4.3e-06 53.9 48 54.2
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 9.6e-06 52.8 39 56.4
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 9.6e-06 52.8 39 56.4
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 9.6e-06 52.8 39 56.4
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 9.6e-06 52.8 28 64.3


User provided reference genes

Program Settings