Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.2e-142 509.2 314 100.0
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 8.3e-105 384.4 315 76.5
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.9e-103 378.3 315 76.5
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 7.2e-101 371.3 339 73.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.3e-86 323.9 324 65.4
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 8.6e-86 321.2 350 71.4
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.5e-85 319.7 318 67.0
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 9.5e-85 317.8 318 69.2
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.6e-82 309.7 326 67.5
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.2e-81 306.6 322 64.3
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.1e-80 302.4 330 65.2
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-78 297.7 316 55.1
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.1e-78 295.4 316 61.7
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-77 293.9 319 63.3
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.5e-77 293.9 319 63.3
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.3e-77 291.6 357 67.8
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.6e-76 289.3 318 66.4
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.6e-76 289.3 318 66.4
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.1e-76 288.1 319 62.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.4e-75 287.3 215 87.0
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.8e-75 287.0 321 60.1
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.1e-75 286.2 313 61.0
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 6.8e-75 285.0 317 61.2
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 6.8e-75 285.0 321 59.5
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 8.9e-75 284.6 329 61.1
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.4e-74 282.7 322 60.9
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 7.1e-72 275.0 322 56.2
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.8e-71 271.6 332 60.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.2e-67 258.8 332 57.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 8.9e-67 258.1 323 57.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 6.4e-65 251.9 316 62.0
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.3e-64 248.1 327 49.5
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.5e-63 246.1 317 56.2
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.6e-62 241.9 329 59.3
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 9.6e-61 238.0 331 56.2
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 6.2e-60 235.3 334 49.4
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.9e-57 226.5 333 56.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 2.9e-57 226.5 327 51.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.9e-57 226.5 315 57.1
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 6.4e-57 225.3 344 53.5
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.4e-56 224.2 326 53.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 5.4e-56 222.2 333 55.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.1e-55 220.3 326 53.1
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-55 220.3 252 55.2
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-54 217.2 311 47.3
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 3.9e-54 216.1 341 52.2
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 6.6e-54 215.3 331 54.7
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-53 214.2 305 55.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.5e-53 213.4 307 55.4
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 9.6e-53 211.5 326 54.3
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.4e-51 207.6 340 52.1
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 4.0e-51 206.1 372 51.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.0e-50 203.8 264 55.7
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-50 203.4 323 53.6
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.6e-50 203.4 317 45.1
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 7.6e-50 201.8 341 52.5
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 2.9e-49 199.9 371 50.7
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.9e-48 197.2 322 43.5
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.4e-48 196.8 287 50.9
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 4.2e-48 196.1 314 51.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 4.2e-48 196.1 314 51.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.0e-46 189.9 334 52.4
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 6.7e-46 188.7 315 47.6
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.6e-45 185.7 324 51.5
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 7.4e-45 185.3 325 50.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 9.6e-45 184.9 298 52.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.1e-44 183.7 341 51.9
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 8.1e-44 181.8 331 44.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.4e-43 180.3 343 50.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.3e-41 174.5 345 49.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-41 174.5 346 49.7
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-41 174.5 345 49.9
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-41 174.5 343 50.1
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.4e-40 171.0 338 49.7
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 4.2e-40 169.5 330 44.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.1e-40 168.7 322 49.1
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.3e-40 168.3 341 39.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 9.3e-40 168.3 341 52.2
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.2e-39 167.9 332 50.0
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.2e-39 167.9 317 40.1
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.1e-38 162.5 338 39.9
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.1e-37 161.4 322 44.4
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.9e-37 160.6 319 40.1
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.5e-37 160.2 337 38.9
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 5.7e-37 159.1 342 41.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 7.4e-37 158.7 339 38.3
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 7.4e-37 158.7 345 39.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 9.6e-37 158.3 216 61.1
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.7e-36 156.4 323 44.0
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.8e-35 154.1 338 39.9
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.9e-33 146.7 312 36.9
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.9e-33 146.7 333 43.2
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 5.0e-33 146.0 326 42.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.2e-32 142.9 297 43.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-31 141.4 315 45.1
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.6e-31 141.0 337 41.2
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-31 139.8 353 43.3
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-31 139.8 353 43.3
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-31 139.8 353 43.3
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.0e-30 136.7 318 36.2
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.1e-30 136.0 304 47.7
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.1e-30 136.0 340 45.3
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 8.7e-30 135.2 315 40.6
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.5e-29 133.7 292 37.3
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.3e-28 131.3 303 39.9
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.3e-28 129.0 339 35.7
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.4e-27 127.9 332 41.6
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.4e-27 127.9 340 41.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.8e-27 127.5 337 37.4
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.2e-26 124.8 318 38.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.2e-26 124.8 331 42.6
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 4.5e-26 122.9 180 47.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.2e-25 120.6 317 44.5
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.1e-24 118.2 319 35.1
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.9e-24 117.5 342 38.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.4e-24 115.2 336 33.6
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.2e-23 114.8 395 38.5
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.7e-23 113.6 319 38.9
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 3.0e-22 110.2 340 34.7
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 6.7e-22 109.0 328 36.9
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 8.8e-22 108.6 342 39.2
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 8.8e-22 108.6 314 36.3
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.1e-21 108.2 336 38.4
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.1e-21 108.2 336 38.4
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.1e-21 108.2 343 37.9
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.1e-21 108.2 301 32.9
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 3.3e-21 106.7 245 46.1
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 5.7e-21 105.9 341 37.8
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 5.7e-21 105.9 348 41.7
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 9.7e-21 105.1 339 37.5
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.2e-20 104.0 331 33.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 3.1e-19 100.1 346 36.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 4.1e-19 99.8 345 37.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-18 98.2 357 35.9
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 4.5e-18 96.3 354 35.3
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.9e-18 95.9 317 40.7
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 7.7e-18 95.5 304 42.4
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 7.7e-18 95.5 342 35.7
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 7.7e-18 95.5 342 35.7
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 7.7e-18 95.5 338 40.5
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.9e-17 93.6 349 37.0
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.6e-13 80.5 285 31.2
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.3e-13 80.1 325 33.8
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 5.7e-13 79.3 307 38.1
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 9.7e-13 78.6 323 32.8
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 8.5e-09 65.5 65 52.3
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-08 64.7 259 31.7
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 9.4e-08 62.0 260 33.8
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.6e-07 60.1 59 55.9
Dinv25581 Davidia involucrata HOM05D001488 ORTHO05D001456 8.0e-07 58.9 228 31.6
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 1.0e-06 58.5 105 41.9
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.0e-06 56.6 111 36.9
Thhalv10022002m.g Eutrema salsugineum HOM05D001488 ORTHO05D001456 5.2e-06 56.2 229 30.6


User provided reference genes

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