Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.7e-108 396.0 198 100.0
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.6e-101 372.9 198 94.4
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.7e-101 372.1 198 94.4
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 4.9e-95 351.3 198 85.9
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.2e-88 330.1 198 81.3
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 5.8e-88 327.8 198 81.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.8e-87 325.1 198 77.8
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 1.1e-86 323.6 198 80.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.1e-86 323.6 198 79.3
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.4e-86 322.4 198 77.3
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.6e-85 318.2 196 77.6
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 6.0e-85 317.8 198 76.8
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.0e-84 317.0 198 76.3
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.3e-84 315.8 198 75.3
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.9e-84 315.1 198 75.8
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 6.6e-84 314.3 198 77.8
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.9e-83 312.8 198 73.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 7.3e-83 310.8 197 75.6
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-82 310.1 196 75.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.1e-82 309.3 198 73.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 71.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 73.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 71.2
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 8.1e-82 307.4 197 72.1
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.1e-81 307.0 198 73.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 73.2
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.0e-81 305.1 196 74.5
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 6.9e-81 304.3 197 74.6
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 71.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.5e-80 303.1 197 72.1
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 73.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 73.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 72.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 72.2
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 9.9e-80 300.4 197 70.6
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 72.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.3e-79 300.1 195 74.4
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 3.8e-79 298.5 198 70.7
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 6.4e-79 297.7 197 71.1
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.4e-79 297.7 197 74.1
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 8.4e-79 297.4 197 70.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 73.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 71.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 69.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.9e-78 296.2 196 70.9
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.9e-78 296.2 195 71.3
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 71.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.4e-78 295.8 197 70.6
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 72.4
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 71.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 69.4
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 5.4e-78 294.7 197 70.1
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 66.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 69.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-77 292.7 183 76.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.1e-77 292.7 198 68.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 2.7e-77 292.4 197 69.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 4.6e-77 291.6 197 71.1
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 70.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.0e-76 290.4 189 72.5
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 68.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 67.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 66.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 69.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 67.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 66.2
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 66.7
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 66.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 67.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.9e-75 286.2 198 64.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.6e-74 283.1 197 72.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 3.6e-74 282.0 199 68.8
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.8e-74 281.6 197 66.0
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.8e-74 281.6 197 66.0
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.8e-74 281.6 191 70.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.4e-73 279.3 186 72.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.1e-73 278.9 196 67.9
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 4.0e-73 278.5 197 65.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 6.9e-73 277.7 198 65.7
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.0e-73 277.3 184 71.2
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 9.0e-73 277.3 198 64.6
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.2e-72 276.9 197 64.0
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 64.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 4.5e-72 275.0 190 66.8
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 4.5e-72 275.0 186 72.0
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 5.8e-72 274.6 198 64.6
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.8e-72 274.6 198 65.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.8e-72 274.6 184 70.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.8e-72 274.6 184 70.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 7.6e-72 274.2 197 64.0
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.7e-71 273.1 199 63.8
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.9e-71 271.6 198 67.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 8.4e-71 270.8 198 65.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.1e-70 270.4 196 64.3
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.9e-70 269.6 198 64.6
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.9e-70 269.6 191 63.9
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 64.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 62.6
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 62.6
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 62.6
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 4.2e-70 268.5 198 63.6
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.5e-70 268.1 198 62.1
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.7e-69 265.8 197 61.4
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.5e-69 265.4 198 61.1
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.5e-69 265.4 186 69.9
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 7.9e-69 264.2 183 65.6
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-68 263.5 183 65.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 2.3e-68 262.7 199 62.8
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-67 260.0 192 64.1
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.5e-67 259.2 196 60.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 9.6e-67 257.3 198 60.6
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.7e-66 255.4 191 63.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.0e-65 251.9 178 65.2
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 7.6e-64 247.7 198 57.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.3e-63 246.9 180 65.6
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.6e-61 240.0 198 58.1
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 4.6e-61 238.4 196 60.2
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.9e-59 233.0 187 58.8
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 6.3e-58 228.0 183 59.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 2.4e-57 226.1 170 62.9
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.5e-56 221.9 169 62.1
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.5e-54 216.1 197 53.3
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 5.5e-54 214.9 142 68.3
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 3.5e-53 212.2 187 55.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 6.1e-53 211.5 144 66.7
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.9e-52 208.8 144 61.8
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.9e-52 208.8 156 58.3
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 6.7e-52 208.0 194 51.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-50 203.8 155 60.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 8.2e-50 201.1 198 48.5
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.4e-49 199.5 144 62.5
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 8.5e-47 191.0 198 55.1
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 3.6e-45 185.7 114 71.1
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.7e-42 176.8 198 48.0
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 8.2e-42 174.5 126 67.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 5.9e-40 168.3 98 76.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.0e-35 153.3 182 44.0
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.7e-31 140.2 183 45.4
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 6.5e-31 138.3 184 43.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.2e-24 117.5 120 51.7
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.8e-23 112.5 179 34.6
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.1e-21 106.7 68 72.1
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 6.1e-21 105.1 74 62.2
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 6.8e-20 101.7 71 57.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.5e-19 100.5 118 44.9
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 4.4e-19 99.0 192 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.2e-18 96.7 124 42.7
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.4e-17 93.2 104 46.2
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 9.1e-17 91.3 64 60.9
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.6e-13 80.5 58 67.2
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.0e-09 65.1 43 67.4
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.8e-07 59.3 35 77.1
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.6e-07 58.5 44 61.4


User provided reference genes

Program Settings