Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 2.7e-203 711.8 368 100.0
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.1e-167 593.6 375 84.8
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-167 593.2 374 84.2
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-167 593.2 374 84.2
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 3.1e-167 592.0 374 85.6
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.6e-166 589.0 375 84.0
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 5.8e-166 587.8 378 84.4
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 8.3e-165 583.9 373 84.2
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 3.2e-164 582.0 374 83.7
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 3.3e-161 572.0 377 81.4
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.2e-158 563.5 374 81.3
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.3e-153 545.4 367 79.3
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 7.6e-150 534.3 370 77.8
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 4.9e-149 531.6 374 75.1
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.1e-148 530.4 365 77.0
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.6e-147 526.6 374 75.1
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 2.3e-146 522.7 378 75.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 6.6e-146 521.2 374 75.7
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 5.6e-145 518.1 369 74.5
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 7.3e-145 517.7 374 74.1
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.8e-144 515.8 368 74.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 3.6e-144 515.4 371 74.7
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 4.8e-144 515.0 357 76.2
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.8e-143 513.1 372 73.9
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 4.0e-143 511.9 369 74.0
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.0e-143 510.8 369 73.7
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 9.0e-143 510.8 368 73.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.5e-142 510.0 366 73.8
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 2.6e-142 509.2 333 79.6
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 4.5e-142 508.4 324 81.5
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 5.8e-142 508.1 331 79.8
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.8e-142 508.1 368 73.6
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 5.8e-142 508.1 329 83.6
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 9.9e-142 507.3 357 75.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 9.9e-142 507.3 361 76.5
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.3e-141 506.9 371 73.6
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 1.7e-141 506.5 373 74.0
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.9e-141 505.8 360 75.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 3.8e-141 505.4 345 77.4
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 4.9e-141 505.0 369 73.7
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.1e-140 503.8 375 73.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.9e-140 503.1 356 76.7
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 3.2e-140 502.3 373 74.0
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 7.1e-140 501.1 370 72.2
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 7.1e-140 501.1 343 76.1
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 4.6e-139 498.4 377 72.7
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 4.6e-139 498.4 355 73.0
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 6.0e-139 498.0 370 71.6
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 6.0e-139 498.0 369 71.0
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.0e-138 497.3 340 76.2
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.0e-138 497.3 374 72.5
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.0e-138 497.3 365 72.3
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 1.5e-137 493.4 325 78.8
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 3.3e-137 492.3 333 77.2
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.6e-137 491.5 328 77.4
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 1.6e-136 490.0 371 70.6
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.6e-136 490.0 342 74.9
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.1e-136 489.6 371 70.4
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.8e-136 488.4 406 66.7
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 9.0e-135 484.2 330 77.0
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.5e-134 483.4 377 69.8
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 7.6e-134 481.1 323 77.4
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.3e-133 480.3 305 80.3
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 3.8e-133 478.8 324 76.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 4.9e-133 478.4 333 74.5
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 6.4e-133 478.0 308 77.3
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 8.4e-133 477.6 371 68.7
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 1.9e-132 476.5 358 68.4
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.6e-131 473.4 347 71.8
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.6e-131 473.4 358 70.4
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.5e-131 472.2 335 75.5
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.0e-131 471.5 317 76.0
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.3e-130 470.3 365 71.5
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 8.7e-130 467.6 379 67.3
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.9e-129 466.5 309 76.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 2.5e-129 466.1 369 68.3
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 4.3e-129 465.3 306 77.1
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 7.4e-129 464.5 360 68.9
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 7.4e-129 464.5 367 68.9
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-128 463.4 367 68.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-128 463.4 355 69.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 2.8e-128 462.6 369 67.2
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 4.8e-128 461.8 339 71.1
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 8.2e-128 461.1 324 74.1
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-127 460.7 367 68.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.1e-127 460.7 319 75.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 2.4e-127 459.5 325 73.8
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 2.4e-127 459.5 325 73.8
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.1e-127 459.1 333 71.5
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 4.0e-127 458.8 329 74.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 4.0e-127 458.8 339 70.8
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 4.0e-127 458.8 385 65.5
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 6.9e-127 458.0 330 72.7
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-126 456.8 367 67.6
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.5e-126 456.8 369 65.0
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.0e-126 456.4 312 73.1
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.4e-126 455.7 312 73.1
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.5e-124 448.4 279 78.9
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 7.1e-124 448.0 371 65.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.0e-122 444.1 355 65.6
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.0e-122 444.1 318 69.2
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 1.3e-122 443.7 313 70.9
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.8e-122 443.4 347 68.6
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 2.3e-122 443.0 354 65.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.1e-122 441.8 354 64.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.1e-121 440.7 281 74.7
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.9e-121 439.9 316 73.7
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 2.5e-121 439.5 335 69.3
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 7.4e-121 438.0 344 66.9
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.8e-120 436.0 357 64.4
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.8e-120 435.3 354 64.1
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 6.3e-120 434.9 281 76.2
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 6.3e-120 434.9 281 76.2
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 2.4e-119 433.0 341 66.0
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 5.3e-119 431.8 276 76.4
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 5.3e-119 431.8 276 76.4
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 5.3e-119 431.8 276 76.4
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 5.3e-119 431.8 276 76.4
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 9.0e-119 431.0 342 65.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.3e-117 427.2 439 54.9
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.6e-115 418.7 421 58.7
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.6e-115 418.7 323 69.7
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 8.5e-109 397.9 310 68.4
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 7.2e-108 394.8 322 63.4
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 7.9e-107 391.3 309 70.9
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.2e-104 381.3 261 75.5
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.4e-102 375.9 330 64.2
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.7e-99 365.5 213 85.0
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 4.4e-97 359.0 280 71.1
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.0e-89 333.6 271 68.6
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.4e-89 332.4 271 68.6
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 2.4e-87 326.6 273 57.9
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.1e-87 325.9 190 85.3
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 8.5e-85 318.2 270 58.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 5.5e-84 315.5 273 57.9
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.7e-80 302.8 266 63.2
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 8.3e-72 275.0 251 62.5
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 7.0e-71 271.9 255 51.4
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-69 266.9 149 90.6
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.8e-69 266.2 231 64.9
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-68 264.2 181 77.9
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-67 260.8 149 89.3
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.4e-66 257.7 201 69.2
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-65 254.2 136 94.9
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.3e-56 224.6 162 74.7
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-47 194.9 181 61.9
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 5.4e-47 192.6 104 92.3
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 4.6e-46 189.5 116 82.8
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 2.2e-40 170.6 157 56.1
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-39 167.2 132 70.5
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 6.2e-35 152.5 77 96.1
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-34 150.2 78 93.6
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.3e-32 144.8 79 91.1
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.3e-28 130.2 98 69.4
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 7.3e-28 129.0 119 61.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 3.6e-27 126.7 62 93.5
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.4e-26 124.0 114 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 2.4e-23 114.0 157 41.4
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 6.0e-22 109.4 107 60.7
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 3.9e-21 106.7 72 70.8
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.9e-20 104.4 58 93.1
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.4e-18 98.2 74 67.6
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 2.4e-18 97.4 160 38.8
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 4.2e-15 86.7 55 76.4
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 7.9e-14 82.4 55 72.7
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 8.7e-13 79.0 53 69.8
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.6e-06 58.2 36 69.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 7.9e-06 55.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 7.9e-06 55.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 7.9e-06 55.8 28 92.9


User provided reference genes

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