Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 8.6e-63 243.4 118 100.0
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 2.8e-37 158.7 118 64.4
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.1e-36 156.8 116 66.4
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 4.0e-36 154.8 115 66.1
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.0e-36 154.8 117 64.1
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 5.8e-35 151.0 118 64.4
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 2.2e-34 149.1 116 66.4
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 5.1e-31 137.9 115 61.7
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.5e-30 135.6 120 59.2
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 8.1e-29 130.6 119 61.3
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 3.1e-28 128.6 108 61.1
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 2.7e-24 115.5 132 50.0
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 2.9e-18 95.5 113 49.6
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 6.4e-18 94.4 126 47.6
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 4.2e-17 91.7 114 46.5
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 7.1e-17 90.9 110 46.4
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 6.0e-16 87.8 124 50.0
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 7.9e-16 87.4 123 46.3
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 7.9e-16 87.4 122 46.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.3e-15 86.7 123 41.5
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 3.0e-15 85.5 108 47.2
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 3.0e-15 85.5 108 47.2
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.0e-15 85.5 126 42.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 3.9e-15 85.1 119 41.2
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.9e-15 85.1 109 48.6
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.5e-14 82.4 123 44.7
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.3e-14 82.0 116 40.5
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 7.4e-14 80.9 116 39.7
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.3e-13 80.1 115 43.5
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 4.8e-13 78.2 126 41.3
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 6.2e-13 77.8 110 44.5
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 8.1e-13 77.4 121 43.0
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.4e-12 76.6 135 41.5
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.4e-12 76.6 119 43.7
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.4e-12 76.6 119 44.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.4e-12 76.6 121 39.7
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.0e-12 75.1 114 46.5
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 5.3e-12 74.7 120 40.8
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 5.3e-12 74.7 119 38.7
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.2e-11 73.6 114 42.1
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 2.0e-11 72.8 121 41.3
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.0e-11 72.8 127 40.9
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.6e-11 72.4 116 43.1
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.6e-11 72.4 116 43.1
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.6e-11 72.4 123 40.7
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.5e-11 71.6 119 41.2
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 5.8e-11 71.2 117 40.2
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 9.9e-11 70.5 113 39.8
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.3e-10 70.1 112 40.2
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 112 37.5
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.7e-10 69.7 112 39.3
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.2e-10 69.3 120 39.2
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.2e-10 69.3 120 39.2
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 2.9e-10 68.9 112 38.4
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 2.9e-10 68.9 112 38.4
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 3.8e-10 68.6 85 43.5
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.4e-10 67.8 133 36.8
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 6.4e-10 67.8 112 39.3
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.4e-10 67.4 109 37.6
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 8.4e-10 67.4 112 38.4
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 8.4e-10 67.4 112 37.5
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 8.4e-10 67.4 114 37.7
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.1e-09 67.0 79 48.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.1e-09 67.0 79 48.1
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.1e-09 67.0 79 48.1
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 1.4e-09 66.6 112 38.4
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.4e-09 66.6 112 37.5
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.4e-09 66.6 112 37.5
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 1.4e-09 66.6 116 40.5
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.9e-09 66.2 129 38.8
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 2.4e-09 65.9 115 37.4
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 3.2e-09 65.5 119 38.7
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.2e-09 65.5 115 40.9
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 7.1e-09 64.3 112 38.4
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 7.1e-09 64.3 112 38.4
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 7.1e-09 64.3 112 38.4
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 7.1e-09 64.3 116 33.6
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 7.1e-09 64.3 109 40.4
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 9.3e-09 63.9 112 42.0
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 1.2e-08 63.5 112 37.5
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.2e-08 63.5 112 37.5
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.2e-08 63.5 112 37.5
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-08 63.5 119 40.3
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.6e-08 63.2 112 36.6
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.6e-08 63.2 135 37.0
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 2.1e-08 62.8 119 37.8
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.1e-08 62.8 119 40.3
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.1e-08 62.8 117 38.5
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.1e-08 62.8 116 36.2
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 3.5e-08 62.0 130 36.9
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.0e-08 61.2 117 37.6
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 6.0e-08 61.2 117 37.6
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 7.9e-08 60.8 110 45.5
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 7.9e-08 60.8 126 40.5
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 7.9e-08 60.8 108 40.7
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.0e-07 60.5 112 35.7
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.0e-07 60.5 112 39.3
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.3e-07 60.1 128 38.3
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.3e-07 60.1 119 38.7
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.3e-07 60.1 106 40.6
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.8e-07 59.7 119 38.7
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.8e-07 59.7 117 35.0
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 2.3e-07 59.3 83 44.6
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 2.3e-07 59.3 114 42.1
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 3.0e-07 58.9 128 32.0
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 3.9e-07 58.5 119 33.6
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 3.9e-07 58.5 128 42.2
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 3.9e-07 58.5 128 42.2
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 3.9e-07 58.5 128 42.2
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 5.1e-07 58.2 115 35.7
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 8.7e-07 57.4 128 39.8
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 8.7e-07 57.4 128 39.8
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.1e-06 57.0 115 34.8
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 2.5e-06 55.8 126 39.7
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.5e-06 55.8 121 38.0
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.5e-06 55.8 121 38.0
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 3.3e-06 55.5 119 38.7
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 5.6e-06 54.7 117 33.3
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 7.4e-06 54.3 116 38.8
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 9.6e-06 53.9 39 59.0


User provided reference genes

Program Settings