Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.8e-136 489.2 237 100.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.2e-69 265.8 263 61.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.3e-62 243.8 277 55.2
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.2e-62 243.0 278 56.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.8e-62 242.3 243 59.7
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 6.5e-62 241.5 217 64.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-61 240.7 278 56.1
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-61 240.7 278 56.1
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.5e-61 240.4 236 58.5
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.6e-60 236.9 297 52.5
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.1e-60 236.5 281 55.2
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.6e-60 235.7 230 59.6
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 4.7e-60 235.3 269 57.6
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 8.8e-59 231.1 258 57.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 5.7e-58 228.4 286 54.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.8e-57 226.1 265 55.8
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 4.8e-57 225.3 311 51.4
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.8e-56 223.4 269 55.4
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.1e-56 222.6 283 51.9
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.1e-56 222.6 229 59.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 9.1e-56 221.1 288 53.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 7.7e-55 218.0 269 54.6
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.3e-54 216.5 279 52.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.8e-54 215.7 278 51.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.9e-53 213.4 225 58.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.6e-52 209.1 287 51.9
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 6.1e-52 208.4 299 48.5
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 4.0e-51 205.7 301 50.2
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 3.4e-50 202.6 243 55.1
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 3.4e-50 202.6 270 50.4
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.4e-50 202.6 251 51.4
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.4e-50 202.2 220 57.7
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 5.7e-50 201.8 202 59.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 9.8e-50 201.1 248 50.4
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-49 200.7 227 54.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-49 200.7 228 57.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.1e-48 197.6 240 52.5
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.4e-48 196.4 222 58.1
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 4.1e-48 195.7 277 49.5
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.1e-48 195.7 255 52.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.0e-47 193.4 277 46.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.7e-46 190.3 255 51.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.3e-46 189.9 211 57.8
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.0e-46 188.7 291 48.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.9e-45 186.8 265 49.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.3e-45 186.0 271 49.1
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.3e-45 186.0 271 49.1
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 7.3e-45 184.9 271 48.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.2e-44 184.1 226 53.1
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.1e-44 183.3 241 51.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.1e-44 183.3 231 50.6
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.8e-44 183.0 270 51.1
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.4e-43 180.6 240 51.7
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-43 180.6 278 48.2
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.8e-43 180.3 260 47.3
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.0e-42 176.8 276 46.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.0e-42 176.8 221 51.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.4e-42 175.6 225 54.2
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.7e-41 173.7 268 45.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.3e-41 171.4 230 51.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.4e-40 170.6 206 53.9
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 4.1e-40 169.1 221 49.3
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.4e-40 168.7 270 44.1
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 5.4e-40 168.7 266 45.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.4e-40 168.7 269 45.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.4e-40 168.7 244 45.9
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.2e-39 167.5 270 43.3
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.0e-39 166.8 218 50.0
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 3.5e-39 166.0 268 44.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-39 166.0 268 44.8
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.5e-39 166.0 268 44.8
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.0e-38 164.5 256 48.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-38 163.7 268 44.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-38 163.7 267 45.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 5.0e-38 162.2 264 44.3
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.0e-38 162.2 217 50.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-37 159.8 222 49.1
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.3e-37 159.5 215 48.8
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 9.5e-37 157.9 237 50.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.6e-36 157.1 230 50.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.6e-36 156.0 204 48.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-36 156.0 259 45.9
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 8.0e-36 154.8 232 49.1
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.0e-36 154.8 218 45.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-35 154.5 222 49.1
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.4e-35 154.1 244 45.5
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 3.1e-35 152.9 257 44.7
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 3.1e-35 152.9 241 46.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.2e-35 152.1 224 49.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 6.8e-35 151.8 185 49.7
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.5e-34 150.6 245 46.5
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.0e-34 150.2 272 43.0
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.4e-34 149.4 271 41.7
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 5.8e-34 148.7 99 73.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 7.5e-34 148.3 247 44.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 9.8e-34 147.9 234 45.7
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-32 143.3 219 46.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.4e-32 143.3 244 48.4
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.1e-32 142.5 222 46.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 5.4e-32 142.1 247 44.1
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 7.1e-32 141.7 206 47.1
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 3.5e-31 139.4 197 48.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.6e-31 139.0 251 42.2
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 8.6e-30 134.8 254 40.2
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.1e-29 134.4 233 41.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-29 133.7 143 53.8
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 8.1e-28 128.3 153 51.6
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.0e-26 123.6 225 42.7
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.8e-26 122.1 226 44.2
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 9.9e-26 121.3 207 44.0
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.2e-25 120.2 282 38.7
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 6.4e-25 118.6 260 38.5
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.1e-24 117.9 92 69.6
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.4e-24 117.5 232 41.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.2e-24 114.8 238 37.4
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 6.0e-23 112.1 78 78.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.0e-23 112.1 231 38.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.1e-22 109.0 225 39.1
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 5.1e-22 109.0 240 37.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.1e-21 107.8 163 47.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.5e-21 106.7 179 43.6
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.3e-21 105.9 188 41.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 7.3e-21 105.1 239 40.2
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.1e-20 103.6 85 68.2
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.7e-20 102.4 242 39.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.7e-20 102.4 107 56.1
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.7e-20 102.4 107 56.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 8.1e-20 101.7 157 45.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.4e-19 100.9 219 40.2
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.4e-19 100.9 250 36.4
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.4e-19 100.9 218 39.9
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.8e-19 100.5 247 33.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.0e-19 99.4 160 46.9
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 5.2e-19 99.0 233 39.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 5.2e-19 99.0 211 39.3
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 5.2e-19 99.0 211 39.3
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.2e-19 99.0 240 35.8
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.2e-18 97.8 281 34.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.5e-18 97.4 200 41.0
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.6e-18 96.7 267 35.6
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 4.4e-18 95.9 176 38.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 7.6e-18 95.1 248 37.1
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.2e-17 93.6 234 38.9
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.0e-14 84.7 254 36.6
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 8.1e-12 75.1 140 46.4
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 5.3e-11 72.4 55 61.8
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 6.9e-11 72.0 55 61.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.3e-09 67.8 65 56.9
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.7e-09 67.4 94 45.7
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-09 66.2 148 37.2
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 2.4e-08 63.5 146 39.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.2e-08 62.8 77 46.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.6e-07 60.8 58 51.7
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.7e-07 60.1 181 33.7
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 7.9e-07 58.5 198 35.9
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.0e-06 56.6 129 38.0
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 3.0e-06 56.6 159 30.8
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 3.9e-06 56.2 85 42.4


User provided reference genes

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