Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 2.7e-72 275.4 154 100.0
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 3.4e-51 205.3 173 69.4
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 5.4e-49 198.0 181 68.0
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 2.7e-48 195.7 153 69.3
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 6.0e-48 194.5 175 65.7
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 6.8e-44 181.0 170 61.8
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 2.0e-43 179.5 183 62.3
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 4.4e-43 178.3 148 65.5
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 9.8e-43 177.2 178 61.2
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 7.1e-41 171.0 145 62.1
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 2.7e-40 169.1 140 63.6
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 3.0e-39 165.6 145 60.7
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.6e-39 164.5 163 60.1
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 1.5e-38 163.3 139 62.6
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 1.9e-38 162.9 139 61.9
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 3.3e-38 162.2 130 65.4
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 3.3e-38 162.2 146 58.9
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 2.1e-37 159.5 146 60.3
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 6.2e-37 157.9 149 60.4
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 8.1e-37 157.5 127 65.4
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 8.1e-37 157.5 143 60.8
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 1.4e-36 156.8 144 59.7
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.4e-36 156.8 140 60.0
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 5.2e-36 154.8 140 57.9
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 8.9e-36 154.1 135 60.0
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 1.5e-35 153.3 133 60.9
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 1.5e-35 153.3 137 59.9
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 4.4e-35 151.8 144 57.6
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 4.4e-35 151.8 144 57.6
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 1.7e-34 149.8 139 56.1
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 2.2e-34 149.4 139 56.1
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 2.2e-34 149.4 139 56.1
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 2.9e-34 149.1 134 59.7
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 2.9e-34 149.1 124 60.5
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 3.7e-34 148.7 142 58.5
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.9e-34 148.3 139 56.1
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 7.1e-33 144.4 147 54.4
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 7.8e-32 141.0 140 55.0
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.3e-31 140.2 148 53.4
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.5e-30 136.7 152 50.7
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 7.3e-30 134.4 136 55.1
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 2.1e-29 132.9 135 53.3
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 6.2e-29 131.3 117 59.8
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 6.2e-29 131.3 117 59.8
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 8.1e-29 131.0 133 53.4
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 1.1e-28 130.6 128 55.5
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 2.4e-28 129.4 131 55.0
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 3.1e-28 129.0 126 55.6
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 6.8e-28 127.9 110 60.0
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 8.9e-28 127.5 126 54.8
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 8.9e-28 127.5 126 55.6
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 8.9e-28 127.5 126 54.8
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 1.2e-27 127.1 126 54.8
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 1.2e-27 127.1 109 60.6
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 1.5e-27 126.7 100 64.0
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.5e-27 126.7 128 54.7
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 5.8e-27 124.8 126 51.6
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 5.8e-27 124.8 126 53.2
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 5.8e-27 124.8 132 54.5
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 5.8e-27 124.8 135 52.6
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 9.9e-27 124.0 128 54.7
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 9.9e-27 124.0 126 51.6
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 9.9e-27 124.0 135 52.6
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 2.2e-26 122.9 126 50.8
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 2.2e-26 122.9 97 61.9
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 2.2e-26 122.9 97 61.9
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 2.2e-26 122.9 126 51.6
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 2.2e-26 122.9 126 51.6
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 2.2e-26 122.9 126 51.6
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.2e-26 122.9 131 49.6
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 2.9e-26 122.5 126 50.8
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 4.9e-26 121.7 124 52.4
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 6.4e-26 121.3 120 53.3
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 8.4e-26 120.9 130 46.9
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 1.1e-25 120.6 126 51.6
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 1.1e-25 120.6 126 51.6
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 1.9e-25 119.8 117 59.0
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 2.4e-25 119.4 132 55.3
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 4.2e-25 118.6 160 51.2
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 2.1e-24 116.3 134 52.2
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 2.7e-24 115.9 117 50.4
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 3.5e-24 115.5 116 53.4
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 3.9e-23 112.1 97 58.8
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 5.1e-23 111.7 114 54.4
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 8.7e-23 110.9 124 48.4
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 8.7e-23 110.9 124 50.8
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 1.5e-22 110.2 92 63.0
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.5e-22 109.4 138 47.1
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.6e-21 106.7 104 52.9
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 2.8e-21 105.9 104 52.9
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 3.1e-20 102.4 104 56.7
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 6.9e-20 101.3 99 74.7
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 3.2e-17 92.4 104 45.2
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 3.5e-16 89.0 82 59.8
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 7.9e-16 87.8 87 56.3
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 6.2e-13 78.2 88 50.0
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 4.0e-12 75.5 87 49.4
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 9.0e-12 74.3 57 70.2
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 3.8e-10 68.9 88 46.6
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 2.4e-09 66.2 60 56.7
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 1.2e-08 63.9 74 48.6
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 1.3e-07 60.5 84 40.5
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 3.0e-07 59.3 66 48.5
Os04g0560700 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009470 4.3e-06 55.5 68 44.1


User provided reference genes

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