Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.2e-137 492.3 240 100.0
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 4.4e-98 361.7 176 95.5
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 7.0e-88 327.8 201 77.6
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 7.0e-88 327.8 201 77.6
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 7.0e-88 327.8 201 77.1
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 2.8e-84 315.8 205 72.7
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 3.6e-84 315.5 181 80.7
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.8e-83 313.2 198 76.3
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 4.0e-83 312.0 196 77.0
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.4e-82 308.9 194 76.8
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 3.4e-82 308.9 190 77.4
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 4.4e-82 308.5 192 78.1
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 5.8e-82 308.1 190 75.8
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 9.8e-82 307.4 197 74.1
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.3e-81 307.0 190 75.8
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.7e-81 305.4 198 74.2
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 6.4e-81 304.7 211 70.6
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.4e-80 303.5 202 73.8
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.9e-80 303.1 167 82.0
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 4.1e-80 302.0 177 80.2
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 9.2e-80 300.8 190 75.3
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 2.0e-79 299.7 188 74.5
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.7e-79 299.3 171 79.5
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 4.6e-79 298.5 174 77.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 6.0e-79 298.1 174 77.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 7.8e-79 297.7 183 77.0
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 7.8e-79 297.7 205 70.2
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.3e-78 297.0 193 73.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.3e-78 296.2 177 78.5
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 3.0e-78 295.8 210 70.5
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 3.9e-78 295.4 203 70.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 5.0e-78 295.0 168 80.4
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.5e-77 293.5 202 68.3
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.9e-77 293.1 188 74.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.9e-77 293.1 188 74.5
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.9e-77 293.1 188 74.5
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.9e-77 293.1 169 78.7
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 2.5e-77 292.7 197 70.6
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 2.5e-77 292.7 188 74.5
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.3e-77 292.4 192 71.9
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 4.3e-77 292.0 208 67.8
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 5.6e-77 291.6 199 71.4
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 9.5e-77 290.8 197 70.6
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.2e-76 290.4 198 70.7
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.1e-76 289.7 205 68.8
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 2.8e-76 289.3 197 71.6
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 3.6e-76 288.9 195 70.8
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.6e-76 288.9 195 70.8
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.0e-75 285.4 197 70.1
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.2e-75 285.0 201 68.7
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 6.8e-75 284.6 188 72.9
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 8.9e-75 284.3 210 65.7
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.2e-74 283.9 193 68.4
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.5e-74 283.5 207 66.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 3.4e-74 282.3 198 67.7
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 5.8e-74 281.6 185 71.9
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 7.5e-74 281.2 192 69.8
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 7.5e-74 281.2 199 68.3
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 7.5e-74 281.2 188 70.2
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 9.8e-74 280.8 199 69.8
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.3e-73 280.4 199 68.3
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.3e-73 280.4 192 67.7
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.3e-73 280.4 193 67.4
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.7e-73 280.0 213 62.9
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.7e-73 280.0 192 67.7
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 2.2e-73 279.6 165 79.4
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 2.9e-73 279.3 203 67.0
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 3.7e-73 278.9 228 58.3
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 3.7e-73 278.9 191 68.1
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 8.3e-73 277.7 168 75.0
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.1e-72 277.3 170 74.7
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.1e-72 277.3 188 69.7
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.1e-72 277.3 195 68.2
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 3.2e-72 275.8 184 70.7
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.2e-72 275.8 175 72.6
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 5.4e-72 275.0 200 66.5
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 7.1e-72 274.6 164 74.4
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 2.1e-71 273.1 195 68.7
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 2.1e-71 273.1 187 69.5
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.1e-71 273.1 174 69.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.7e-71 272.7 188 68.1
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.5e-71 272.3 190 66.8
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 4.6e-71 271.9 196 65.8
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 7.8e-71 271.2 188 67.6
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 1.0e-70 270.8 192 67.7
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.3e-70 270.4 208 64.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.3e-70 270.4 208 64.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.0e-70 269.2 208 62.5
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 5.1e-70 268.5 169 72.8
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.5e-69 266.9 185 65.4
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.5e-69 266.9 189 64.6
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.3e-69 265.8 185 64.9
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 7.3e-69 264.6 165 69.7
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.2e-68 263.8 188 68.6
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.1e-68 263.1 217 59.9
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 4.7e-68 261.9 198 63.1
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.7e-68 261.9 188 67.6
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.4e-67 260.4 204 64.7
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 1.8e-67 260.0 195 66.7
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 4.0e-67 258.8 174 70.1
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.6e-66 256.1 195 64.1
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.6e-66 256.1 192 64.6
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 7.6e-66 254.6 167 68.3
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.9e-65 252.7 153 73.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.9e-65 251.9 186 68.3
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 1.6e-63 246.9 153 75.8
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.7e-63 246.1 201 61.2
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 1.0e-62 244.2 181 65.2
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 3.9e-62 242.3 173 66.5
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.1e-61 240.7 188 60.6
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.1e-61 240.7 188 60.6
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 3.3e-61 239.2 188 60.6
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 4.3e-61 238.8 188 60.1
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.6e-61 238.4 188 60.1
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.8e-60 236.1 162 72.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.1e-59 234.2 310 45.2
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.1e-59 234.2 196 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 8.4e-57 224.6 184 58.2
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 4.2e-56 222.2 129 76.7
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.3e-52 210.7 165 60.6
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 1.1e-51 207.6 152 69.7
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.5e-50 203.8 135 71.1
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 2.6e-50 203.0 206 48.1
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 7.1e-48 194.9 103 86.4
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 9.6e-45 184.5 174 49.4
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 3.5e-39 166.0 171 47.4
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.2e-34 151.0 165 50.3
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.8e-34 148.7 154 47.4
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 7.6e-34 148.3 165 42.4
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.7e-33 147.1 78 84.6
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.2e-33 146.7 195 42.1
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.2e-32 142.9 159 46.5
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 7.6e-26 121.7 166 40.4
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 5.0e-25 119.0 186 33.3
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 4.3e-21 105.9 61 70.5
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.9e-16 90.5 163 33.7
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 2.3e-14 83.6 65 58.5
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.2e-12 77.0 70 55.7
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.1e-11 74.7 62 61.3
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.8e-09 66.2 152 34.9
Medtr8g106160 Medicago truncatula HOM05D005581 ORTHO05D006792 8.8e-06 55.1 48 60.4


User provided reference genes

Program Settings