Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 1.4e-149 533.1 314 100.0
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 3.1e-112 409.1 307 78.5
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 4.7e-108 395.2 309 74.4
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 8.3e-105 384.4 301 74.4
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 9.5e-101 370.9 306 72.9
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 4.1e-96 355.5 314 69.4
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 5.9e-95 351.7 294 71.8
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 8.0e-92 341.3 314 66.6
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 1.4e-88 330.5 324 63.6
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 9.2e-88 327.8 303 64.4
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 1.1e-83 314.3 303 63.0
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 1.2e-82 310.8 304 62.5
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 2.6e-82 309.7 304 63.2
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 9.8e-82 307.8 318 60.7
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 2.2e-81 306.6 301 63.8
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 2.9e-81 306.2 304 62.2
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 2.9e-81 306.2 327 61.2
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 4.9e-81 305.4 315 60.6
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 8.3e-81 304.7 329 61.1
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 8.3e-81 304.7 329 61.1
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 2.4e-80 303.1 317 62.8
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 4.6e-79 298.9 303 63.4
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 1.0e-78 297.7 309 59.2
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 2.3e-78 296.6 309 59.9
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 2.3e-78 296.6 300 63.0
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 5.1e-78 295.4 309 59.9
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 2.5e-77 293.1 309 59.2
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 7.3e-77 291.6 309 59.2
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 9.5e-77 291.2 300 61.7
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 1.2e-76 290.8 319 58.9
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 4.7e-76 288.9 304 58.6
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 6.2e-76 288.5 304 58.6
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 6.2e-76 288.5 304 58.9
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 8.1e-76 288.1 304 59.2
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 1.8e-75 287.0 304 58.9
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 4.0e-75 285.8 303 59.1
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 5.2e-75 285.4 304 58.2
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 1.5e-74 283.9 316 58.5
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 1.7e-73 280.4 320 55.3
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 6.4e-73 278.5 305 58.7
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 3.2e-72 276.2 303 56.4
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 3.2e-72 276.2 311 54.7
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 1.6e-71 273.9 268 60.4
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 7.8e-71 271.6 304 60.2
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 1.7e-70 270.4 244 63.1
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 2.3e-70 270.0 311 53.4
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 3.0e-70 269.6 304 55.9
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 5.1e-70 268.9 327 52.6
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 8.6e-70 268.1 303 57.8
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 4.3e-69 265.8 303 57.4
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 5.6e-69 265.4 303 55.8
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 1.6e-68 263.8 303 56.1
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 2.1e-68 263.5 309 57.0
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 4.2e-64 249.2 303 54.1
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 1.3e-62 244.2 333 51.4
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 1.3e-60 237.7 274 57.3
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 3.6e-60 236.1 299 53.2
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.4e-59 234.2 326 53.7
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.0e-58 230.3 280 57.1
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 2.6e-58 229.9 264 55.7
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 1.3e-57 227.6 322 50.3
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 2.9e-57 226.5 292 53.4
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 1.4e-56 224.2 322 51.6
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 2.4e-56 223.4 299 50.5
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 6.0e-55 218.8 298 50.3
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 7.9e-55 218.4 271 54.2
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 1.7e-54 217.2 243 60.1
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 3.3e-53 213.0 315 47.6
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 9.6e-53 211.5 270 49.6
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 8.1e-52 208.4 302 47.4
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 1.1e-51 208.0 326 44.5
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 1.4e-51 207.6 314 45.5
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 2.4e-51 206.8 302 46.4
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 4.0e-51 206.1 312 45.8
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 9.0e-51 204.9 298 48.7
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 3.8e-49 199.5 273 49.8
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 4.9e-49 199.1 316 46.2
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 8.4e-49 198.4 300 45.0
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.1e-48 198.0 270 48.9
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 1.9e-48 197.2 302 44.0
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 1.9e-48 197.2 270 44.8
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 2.4e-48 196.8 218 59.2
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 3.2e-48 196.4 302 45.4
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 9.3e-48 194.9 302 45.0
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 9.3e-48 194.9 302 46.0
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 4.6e-47 192.6 301 44.9
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 1.0e-46 191.4 301 44.9
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 1.0e-46 191.4 276 46.7
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 5.6e-45 185.7 291 49.1
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 1.6e-44 184.1 236 51.7
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 2.0e-42 177.2 309 42.1
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 2.9e-41 173.3 244 52.9
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 1.1e-40 171.4 285 42.1
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 1.8e-38 164.1 241 51.5
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 8.7e-38 161.8 253 45.5
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 1.1e-37 161.4 263 42.6
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 2.6e-34 150.2 232 46.1
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 3.8e-33 146.4 224 44.6
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 5.0e-33 146.0 212 43.9
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 3.2e-32 143.3 268 40.3
Glyma.11G037400 Glycine max HOM05D006859 ORTHO05D007990 8.7e-30 135.2 293 39.2
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 8.7e-30 135.2 205 43.4
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 6.9e-27 125.6 201 40.8
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 2.0e-26 124.0 79 81.0
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 7.2e-24 115.5 274 33.6
VMungo1215G2895 Vigna mungo HOM05D006859 ORTHO05D007990 1.1e-21 108.2 271 34.7
Phvul.002G001100 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 2.0e-21 107.5 282 35.8
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 2.6e-21 107.1 316 32.9
Glyma.01G205500 Glycine max HOM05D006859 ORTHO05D007990 3.1e-19 100.1 257 36.6
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 2.2e-17 94.0 81 69.1
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 2.3e-14 84.0 164 43.9
PSO717G0090 Papaver somniferum HOM05D006859 ORTHO05D007990 3.9e-14 83.2 250 33.2
GSVIVG01007348001 Vitis vinifera HOM05D006859 ORTHO05D007990 1.3e-12 78.2 131 40.5
CBR_g52283 Chara braunii HOM05D006859 ORTHO05D007990 1.7e-12 77.8 319 33.2
COL.COLO4_21682 Corchorus olitorius HOM05D006859 ORTHO05D007990 7.0e-11 72.4 163 35.6
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 7.7e-10 68.9 300 32.3
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 1.7e-09 67.8 73 47.9
CDE11G0285 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 1.1e-08 65.1 72 59.7


User provided reference genes

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