Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 3174.0 1616 100.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2932.5 1618 91.5
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2896.7 1617 90.4
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2843.9 1618 89.1
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2833.9 1617 89.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2824.7 1618 89.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2798.1 1639 86.3
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2778.8 1586 89.0
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2562.3 1617 80.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2560.0 1618 80.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2558.9 1622 79.5
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2558.5 1617 80.1
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2558.1 1615 78.9
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2554.6 1618 79.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2554.6 1616 79.4
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2543.1 1613 79.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2532.7 1620 79.3
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2529.2 1613 78.8
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2523.8 1617 78.9
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2522.3 1617 78.2
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2518.0 1626 78.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2508.8 1617 78.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2500.3 1602 77.8
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2495.3 1594 79.5
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2494.9 1623 77.6
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2484.1 1617 77.3
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2476.8 1617 76.5
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2474.5 1601 77.1
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2465.3 1614 77.3
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2461.4 1622 76.8
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2448.7 1604 76.9
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2434.8 1530 80.0
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2421.0 1643 75.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2416.7 1620 76.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2408.6 1629 75.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2398.6 1632 74.9
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2387.8 1928 65.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2379.0 1958 65.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2370.9 1611 73.6
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2370.5 1515 78.5
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2369.7 1594 74.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2359.3 1622 74.2
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2344.3 1622 73.7
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2343.5 1616 72.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2339.3 1611 73.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1627 72.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1615 72.4
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2328.9 1625 73.1
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2328.9 1603 73.7
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2326.2 1619 72.0
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1648 72.3
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2316.2 1623 72.6
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1621 72.6
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2312.7 1617 72.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1601 73.1
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1627 72.3
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2304.6 1615 72.4
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2299.2 1624 72.8
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2299.2 1448 79.8
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2298.5 1670 70.1
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2295.4 1607 71.9
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2295.4 1609 71.8
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2291.9 1614 71.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2276.9 1624 71.2
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2274.2 1622 71.6
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2263.4 1613 71.4
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2253.4 1418 79.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2246.1 1602 71.3
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2245.3 1617 71.4
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2244.9 1615 70.8
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2241.8 1520 74.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2239.5 1617 70.7
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2229.9 1621 70.4
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2226.8 1621 70.3
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2226.1 1619 70.2
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2211.0 1621 69.8
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2209.1 1619 69.7
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2200.2 1623 69.3
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2196.4 1617 69.7
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2193.7 1617 69.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2176.0 1410 79.3
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2166.3 1377 80.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1553 69.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2110.1 1638 66.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2101.2 1605 67.0
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2066.2 1470 72.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2036.2 1616 64.7
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2028.1 1623 65.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2011.5 1598 65.1
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1998.4 1647 63.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1977.6 1198 82.2
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1937.2 1616 62.6
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1883.2 1600 61.6
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1768.1 1566 60.9
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1726.5 1102 78.8
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1712.2 1219 71.5
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1646.7 1416 62.0
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1559.7 1374 61.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1530.4 978 77.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1494.9 977 76.6
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1459.9 1632 49.0
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1405.2 1209 59.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1400.6 1640 48.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1348.2 1587 46.0
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1253.0 1080 61.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1182.2 1619 46.1
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1180.2 732 80.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.3e-298 1029.2 646 80.2
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 3.7e-281 972.6 534 92.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 9.3e-277 958.0 605 82.5
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 5.0e-254 882.5 618 70.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.8e-249 866.7 583 74.6
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-247 861.3 513 84.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-231 808.1 590 69.7
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 2.0e-231 807.4 663 64.9
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.7e-231 805.4 603 68.0
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.8e-218 761.9 500 76.0
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.3e-214 750.7 521 72.9
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 2.4e-200 704.1 478 74.7
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 5.8e-194 682.9 641 57.1
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.7e-191 674.1 508 68.1
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 7.1e-176 622.9 419 77.1
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 9.6e-173 612.5 515 62.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.6e-172 611.7 340 91.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.6e-170 604.4 555 60.0
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.5e-159 567.4 370 78.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.5e-154 550.4 490 57.3
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.8e-150 538.5 325 84.0
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-149 535.0 385 73.0
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.2e-128 464.5 293 81.2
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-125 456.1 316 72.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.0e-122 445.3 246 88.6
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.9e-122 443.7 251 86.9
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.8e-116 424.9 398 56.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.8e-115 422.2 320 67.2
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.7e-114 418.3 371 58.0
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.2e-112 410.2 320 67.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 2.6e-93 348.6 212 84.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.7e-68 266.2 161 83.2
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 5.4e-67 261.2 162 77.8
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.1e-59 236.9 142 78.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.2e-58 233.4 142 79.6
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.3e-57 229.2 146 76.0
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.2e-52 212.6 212 55.7
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 3.7e-47 195.3 118 82.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 3.1e-46 192.2 129 75.2
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.1e-38 165.6 102 81.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.1e-35 157.1 142 60.6
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.4e-35 156.8 143 58.7
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-35 156.4 143 58.0
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.5e-35 156.0 93 80.6
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 58.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 3.9e-33 148.7 100 70.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.3e-32 145.6 101 69.3
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.5e-28 131.3 130 55.4
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-27 129.8 130 54.6
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 5.5e-27 128.3 100 67.0
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 4.7e-26 125.2 84 70.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.6e-24 119.4 106 58.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 4.4e-24 118.6 106 57.5
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.2e-23 114.4 108 62.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.9e-21 108.2 56 87.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.3e-17 96.3 61 80.3
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 4.0e-17 95.5 174 40.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 4.1e-14 85.5 51 72.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.2e-12 79.7 76 56.6
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.5e-12 77.8 51 66.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.2e-10 73.9 56 66.1
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.7e-10 72.8 51 68.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.7e-10 72.8 54 64.8
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 1.4e-09 70.5 59 57.6
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.7e-07 63.5 56 60.7
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 1.7e-07 63.5 38 65.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 3.1e-06 59.3 100 50.0


User provided reference genes

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