Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.1e-110 403.3 205 100.0
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 1.4e-84 316.6 212 77.8
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.9e-81 306.2 200 79.5
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 2.4e-81 305.8 200 79.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 7.9e-80 300.8 208 74.5
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.3e-79 300.1 205 74.6
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 9.0e-76 287.3 197 71.6
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 1.3e-74 283.5 195 68.2
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-74 282.7 197 70.1
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 8.4e-74 280.8 194 73.2
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-73 280.4 197 70.1
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 4.2e-73 278.5 208 67.3
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.2e-72 276.9 206 67.5
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.5e-72 275.4 195 68.2
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.6e-72 275.0 193 69.4
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 4.6e-72 275.0 192 69.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 2.3e-71 272.7 205 65.4
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 3.9e-71 271.9 191 70.2
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 2.5e-70 269.2 191 70.2
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 4.3e-70 268.5 195 66.2
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 4.3e-70 268.5 188 69.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 5.6e-70 268.1 194 66.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 7.4e-70 267.7 207 64.7
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.3e-69 266.9 197 67.0
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.1e-69 266.2 210 64.3
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.1e-68 263.8 210 63.8
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 4.0e-68 261.9 208 62.5
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.2e-67 260.4 192 64.1
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.5e-67 260.0 205 63.9
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.6e-67 259.2 191 64.9
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 3.4e-67 258.8 204 63.7
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.4e-67 258.8 190 68.4
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 1.7e-66 256.5 187 71.7
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 3.8e-66 255.4 208 61.1
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 8.4e-66 254.2 209 60.3
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 8.4e-66 254.2 206 63.1
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-65 253.8 205 62.4
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.4e-65 253.4 207 62.8
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.4e-65 253.4 254 54.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.5e-65 252.7 193 63.2
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.2e-65 252.3 207 63.8
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 4.2e-65 251.9 208 59.6
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.1e-65 251.1 207 63.3
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 7.1e-65 251.1 190 64.2
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 9.3e-65 250.8 209 62.7
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.7e-64 249.2 209 62.2
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 2.7e-64 249.2 187 65.2
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 4.6e-64 248.4 186 65.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.0e-63 247.3 192 62.0
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.3e-63 246.9 194 61.9
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.8e-63 246.5 197 61.9
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.1e-63 245.0 241 54.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 6.7e-63 244.6 190 62.1
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 6.7e-63 244.6 188 62.8
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 8.7e-63 244.2 291 48.5
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.5e-62 243.4 196 61.2
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.5e-62 243.4 197 59.9
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 3.3e-62 242.3 196 61.2
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 4.3e-62 241.9 187 62.6
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 2.1e-61 239.6 208 58.7
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.8e-61 239.2 195 61.0
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 3.7e-61 238.8 190 62.6
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 3.7e-61 238.8 196 61.2
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.7e-61 238.8 197 59.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.7e-61 238.8 191 59.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.7e-61 238.8 189 59.8
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 8.2e-61 237.7 194 60.3
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 8.2e-61 237.7 194 60.3
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 8.2e-61 237.7 218 58.3
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.4e-60 236.9 196 60.2
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 4.1e-60 235.3 205 58.0
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 4.1e-60 235.3 189 60.3
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 6.9e-60 234.6 195 60.5
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.2e-59 233.8 197 58.9
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.5e-59 233.4 192 59.4
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 3.4e-59 232.3 197 58.4
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 3.4e-59 232.3 197 59.9
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.4e-59 232.3 225 56.0
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.0e-58 230.7 194 61.9
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 1.0e-58 230.7 195 61.0
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-58 230.3 197 59.4
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.3e-58 230.3 159 72.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 3.8e-58 228.8 195 59.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 5.0e-58 228.4 184 60.9
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.0e-58 228.4 189 59.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 6.5e-58 228.0 198 59.1
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.2e-57 225.7 153 71.2
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 4.2e-57 225.3 242 53.3
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.2e-56 223.8 188 55.3
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.6e-56 222.2 189 57.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.3e-55 220.3 192 55.7
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.5e-54 216.9 165 66.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 7.4e-54 214.5 202 55.0
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 7.4e-54 214.5 299 43.8
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 8.2e-53 211.1 207 54.6
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.8e-52 209.9 146 70.5
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 5.9e-51 204.9 195 56.4
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 8.5e-50 201.1 191 55.5
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 3.6e-48 195.7 142 66.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 7.9e-48 194.5 347 38.0
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.0e-43 179.9 143 62.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.7e-42 176.8 167 55.7
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.7e-42 176.8 123 69.1
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 2.3e-39 166.4 192 45.3
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 8.8e-39 164.5 260 43.5
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.8e-37 159.5 199 43.7
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 4.1e-36 155.6 146 52.7
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.0e-36 154.8 121 62.0
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 3.8e-34 149.1 199 41.7
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.8e-34 149.1 189 44.4
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.1e-32 143.3 191 43.5
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 4.7e-32 142.1 108 63.9
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 2.2e-29 133.3 113 57.5
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 3.7e-29 132.5 205 41.0
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 7.0e-28 128.3 122 55.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 4.5e-27 125.6 90 66.7
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 3.8e-26 122.5 98 59.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.3e-21 104.8 136 45.6
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 9.1e-20 101.3 75 64.0
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.5e-17 94.0 84 58.3
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.2e-16 90.9 80 55.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.0e-15 87.8 168 34.5
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.0e-15 86.3 147 34.7
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.0e-15 85.9 89 48.3
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.0e-14 83.6 90 46.7
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.6e-14 83.2 89 44.9
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-13 80.5 89 44.9
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 3.7e-13 79.3 56 73.2
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 6.3e-13 78.6 59 69.5
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 4.1e-12 75.9 188 33.0
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 5.4e-12 75.5 54 66.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-10 70.5 52 59.6
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.6e-10 68.2 86 46.5
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.3e-09 65.1 46 65.2
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 4.0e-07 59.3 54 51.9
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 5.2e-07 58.9 52 53.8
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.2e-07 58.9 52 53.8


User provided reference genes

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