Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.3e-137 492.3 256 100.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.0e-89 332.0 256 68.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.8e-89 331.3 256 69.1
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 5.7e-88 328.2 256 67.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 4.9e-87 325.1 256 68.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.1e-86 323.9 256 68.4
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.1e-86 323.9 256 67.2
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.1e-86 322.4 257 66.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.7e-84 316.6 256 66.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.2e-82 310.5 256 65.6
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 6.1e-82 308.1 256 64.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-80 303.5 255 62.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.6e-80 302.8 260 63.1
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.6e-80 302.8 255 64.7
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.9e-79 298.5 256 63.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.9e-78 296.6 256 63.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.9e-78 296.6 241 68.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.2e-78 295.8 257 62.6
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.0e-77 293.1 256 62.1
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 4.6e-77 292.0 256 59.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 7.8e-77 291.2 256 61.7
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 7.8e-77 291.2 256 60.5
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.0e-76 290.8 256 60.9
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.3e-76 290.4 256 60.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.7e-76 290.0 257 61.9
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.3e-76 289.7 258 62.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-76 289.3 258 63.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 5.0e-76 288.5 256 59.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 6.6e-76 288.1 243 63.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 6.6e-76 288.1 241 66.0
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.6e-76 288.1 256 60.5
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.5e-75 287.0 261 62.1
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.9e-75 286.6 233 64.8
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.9e-75 286.6 245 63.7
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.9e-75 286.6 256 62.1
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.9e-75 286.6 261 61.7
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.9e-75 286.6 239 62.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.5e-75 286.2 261 61.3
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-75 285.8 235 66.8
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.3e-75 285.8 258 62.4
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.3e-75 285.4 257 61.9
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 5.6e-75 285.0 245 62.9
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.6e-75 285.0 257 61.9
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.3e-75 284.6 257 61.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.5e-75 284.3 257 61.9
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-74 283.9 260 61.5
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.6e-74 283.5 243 61.7
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.6e-74 283.5 257 59.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.1e-74 283.1 232 63.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.8e-74 282.7 227 63.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.8e-74 282.7 255 60.0
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.8e-74 282.7 258 58.9
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.6e-74 282.3 256 60.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.6e-74 282.3 239 62.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 4.7e-74 282.0 259 58.7
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.7e-74 282.0 235 64.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 8.0e-74 281.2 256 59.0
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-73 280.8 257 59.5
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.1e-73 280.8 256 60.5
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.4e-73 280.4 256 59.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-73 280.4 256 59.4
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.4e-73 280.4 232 63.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.4e-73 280.4 241 63.1
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.8e-73 280.0 257 60.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.1e-73 279.3 237 61.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 6.8e-73 278.1 234 61.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 8.9e-73 277.7 257 62.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.9e-73 277.7 223 67.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-72 277.3 227 63.9
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.5e-72 276.9 247 60.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.5e-72 276.9 240 61.2
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.5e-72 276.9 248 60.9
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.6e-72 276.2 256 58.2
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.6e-72 276.2 234 62.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.6e-72 276.2 235 60.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.4e-72 275.8 257 59.9
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 4.4e-72 275.4 256 58.2
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.4e-72 275.4 244 60.7
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.4e-72 275.4 256 60.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 5.8e-72 275.0 249 59.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 5.8e-72 275.0 248 60.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 9.8e-72 274.2 257 59.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.2e-71 273.1 229 61.1
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.2e-71 273.1 276 57.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-71 273.1 257 58.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 2.2e-71 273.1 244 62.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.9e-71 272.7 255 60.4
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-71 272.7 256 59.4
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.9e-71 272.7 237 62.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 3.7e-71 272.3 236 61.9
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 4.9e-71 271.9 255 58.4
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 8.3e-71 271.2 242 61.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 8.3e-71 271.2 256 59.0
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.1e-70 270.8 256 59.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.1e-70 270.8 245 61.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.4e-70 270.4 241 60.6
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.4e-70 270.4 255 59.2
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.9e-70 270.0 243 59.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.4e-70 269.6 226 60.6
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-70 269.6 253 60.5
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 3.2e-70 269.2 256 58.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 7.0e-70 268.1 257 59.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 7.0e-70 268.1 241 58.9
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 9.2e-70 267.7 257 58.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.6e-69 266.9 256 57.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.1e-69 266.5 257 57.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.1e-69 266.5 257 58.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.6e-69 265.4 314 51.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 7.8e-69 264.6 256 57.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.7e-68 263.5 243 58.8
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.3e-68 263.1 256 57.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.1e-67 260.8 229 60.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 7.3e-67 258.1 276 54.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 8.1e-66 254.6 318 48.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.8e-65 253.4 189 71.4
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.3e-65 253.1 228 57.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.0e-64 250.0 241 59.3
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 4.4e-64 248.8 245 54.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.2e-61 240.7 217 57.1
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.3e-60 237.3 257 54.5
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.9e-59 233.4 188 66.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 9.5e-59 231.1 232 52.2
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.2e-58 228.4 181 68.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.4e-56 222.6 232 50.4
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.9e-56 221.1 243 54.3
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.9e-55 218.8 246 52.4
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.9e-54 216.9 247 52.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.7e-53 213.0 128 80.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.5e-51 207.2 238 49.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 2.1e-50 203.4 264 44.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.8e-50 203.0 197 56.9
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.6e-50 202.6 233 49.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 6.2e-50 201.8 222 52.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.4e-49 200.7 229 48.5
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 2.4e-49 199.9 194 51.0
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.0e-48 196.8 118 80.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.8e-47 192.6 196 56.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.4e-46 189.9 245 46.9
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.1e-45 186.8 120 75.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 3.5e-45 186.0 177 57.6
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.8e-45 184.9 117 76.9
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.1e-43 181.0 118 74.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-41 173.7 104 78.8
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 5.3e-41 172.2 197 54.3
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.8e-39 166.0 245 42.9
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 3.2e-38 162.9 198 44.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 2.5e-35 153.3 304 36.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.2e-29 134.4 197 44.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.7e-29 133.3 154 49.4
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 6.7e-28 128.6 103 65.0
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.5e-27 126.7 103 64.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.3e-27 125.9 81 76.5
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.3e-26 124.4 209 41.6
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.9e-25 118.6 150 48.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 4.2e-22 109.4 75 68.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 3.9e-20 102.8 98 60.2
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 6.7e-20 102.1 59 83.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.5e-19 100.9 67 74.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.5e-19 100.1 76 60.5
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 9.7e-19 98.2 78 62.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.3e-18 97.8 59 78.0
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-18 97.4 81 60.5
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.9e-17 92.0 61 68.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.9e-15 86.7 101 48.5
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.5e-15 85.5 262 30.5
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.1e-14 84.7 92 53.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-14 84.7 186 34.4
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.4e-14 84.3 81 58.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.6e-13 80.9 188 32.4
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.0e-12 78.2 144 39.6
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 3.1e-09 66.6 40 80.0
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 3.1e-09 66.6 63 54.0
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 5.9e-08 62.4 52 59.6
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.4e-06 57.8 44 70.5
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 2.5e-06 57.0 121 34.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 5.5e-06 55.8 35 74.3


User provided reference genes

Program Settings