Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 5.2e-50 200.7 97 100.0
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 1.6e-27 125.9 82 74.4
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 2.1e-27 125.6 82 76.8
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 2.1e-27 125.6 82 76.8
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 8.1e-27 123.6 82 75.6
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 3.1e-26 121.7 82 73.2
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 3.1e-26 121.7 82 73.2
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 2.6e-25 118.6 82 70.7
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 2.9e-24 115.2 82 70.7
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 2.4e-23 112.1 82 68.3
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 7.1e-23 110.5 83 69.9
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 7.1e-23 110.5 83 69.9
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 2.7e-22 108.6 83 67.5
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 3.5e-22 108.2 81 69.1
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 6.0e-22 107.5 83 67.5
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 1.0e-21 106.7 83 66.3
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 1.3e-21 106.3 83 63.9
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-21 106.3 83 63.9
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-21 106.3 83 63.9
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-21 106.3 83 63.9
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-21 106.3 83 63.9
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 1.8e-21 105.9 82 64.6
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 2.3e-21 105.5 82 65.9
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 2.3e-21 105.5 81 66.7
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 3.0e-21 105.1 84 63.1
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 3.0e-21 105.1 83 67.5
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 5.1e-21 104.4 82 64.6
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 1.1e-20 103.2 84 63.1
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 1.9e-20 102.4 84 65.5
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 1.9e-20 102.4 84 65.5
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 1.9e-20 102.4 84 65.5
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.5e-20 102.1 84 59.5
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 2.5e-20 102.1 84 64.3
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 4.3e-20 101.3 82 62.2
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 4.3e-20 101.3 61 78.7
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 9.6e-20 100.1 88 60.2
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 9.6e-20 100.1 83 63.9
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.3e-19 99.8 82 63.4
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 1.6e-19 99.4 80 61.2
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 2.1e-19 99.0 82 61.0
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 2.1e-19 99.0 83 61.4
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 2.8e-19 98.6 83 59.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 3.7e-19 98.2 81 63.0
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 8.2e-19 97.1 83 61.4
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 8.2e-19 97.1 79 64.6
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.4e-18 96.3 82 58.5
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 1.8e-18 95.9 84 59.5
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 3.1e-18 95.1 82 59.8
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 4.0e-18 94.7 95 54.7
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 1.5e-17 92.8 82 56.1
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.3e-16 89.7 83 56.6
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 1.7e-16 89.4 80 58.8
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 2.2e-16 89.0 83 56.6
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 2.2e-16 89.0 82 52.4
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 2.2e-16 89.0 84 54.8
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 2.9e-16 88.6 83 56.6
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.5e-15 85.5 83 56.6
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 5.5e-15 84.3 82 48.8
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 9.3e-15 83.6 88 48.9
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.2e-14 83.2 91 47.3
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 1.2e-14 83.2 83 51.8
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 1.6e-14 82.8 89 50.6
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 2.1e-14 82.4 84 51.2
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 2.7e-14 82.0 88 47.7
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 3.5e-14 81.6 81 56.8
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 3.5e-14 81.6 88 47.7
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 4.6e-14 81.3 87 50.6
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 6.0e-14 80.9 89 49.4
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 7.9e-14 80.5 83 54.2
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 7.9e-14 80.5 83 54.2
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 7.9e-14 80.5 88 46.6
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 7.9e-14 80.5 86 47.7
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 7.9e-14 80.5 82 53.7
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 7.9e-14 80.5 82 52.4
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 1.0e-13 80.1 93 46.2
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.3e-13 79.7 84 50.0
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 1.8e-13 79.3 86 50.0
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.8e-13 79.3 80 47.5
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 2.3e-13 79.0 90 50.0
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 2.3e-13 79.0 90 51.1
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 2.3e-13 79.0 88 46.6
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 3.0e-13 78.6 85 50.6
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 3.9e-13 78.2 93 48.4
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 3.9e-13 78.2 93 48.4
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 3.9e-13 78.2 84 51.2
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 6.7e-13 77.4 88 45.5
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 8.7e-13 77.0 64 65.6
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 8.7e-13 77.0 90 46.7
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 8.7e-13 77.0 85 50.6
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 1.1e-12 76.6 82 50.0
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.1e-12 76.6 90 50.0
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.5e-12 76.3 90 50.0
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.5e-12 76.3 90 50.0
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.5e-12 76.3 85 50.6
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 1.9e-12 75.9 90 50.0
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.5e-12 75.5 96 47.9
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 3.3e-12 75.1 86 48.8
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 3.3e-12 75.1 84 47.6
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 3.3e-12 75.1 89 50.6
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 5.7e-12 74.3 88 46.6
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 7.4e-12 73.9 83 47.0
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.3e-11 73.2 86 48.8
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 1.3e-11 73.2 80 46.2
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.6e-11 72.8 87 44.8
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 2.2e-11 72.4 91 49.5
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 2.8e-11 72.0 80 48.8
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 3.7e-11 71.6 83 50.6
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 3.7e-11 71.6 88 47.7
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 8.2e-11 70.5 88 44.3
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 1.4e-10 69.7 84 48.8
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 1.8e-10 69.3 73 49.3
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 1.8e-10 69.3 73 49.3
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 1.8e-10 69.3 84 45.2
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 1.8e-10 69.3 89 44.9
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 2.4e-10 68.9 88 47.7
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 4.1e-10 68.2 83 44.6
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 4.1e-10 68.2 83 43.4
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 6.9e-10 67.4 83 45.8
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 6.9e-10 67.4 83 45.8
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 9.0e-10 67.0 89 43.8
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 1.2e-09 66.6 82 48.8
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.2e-09 66.6 84 44.0
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.5e-09 66.2 83 44.6
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 3.4e-09 65.1 89 43.8
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 3.4e-09 65.1 85 45.9
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 5.9e-09 64.3 81 43.2
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 5.9e-09 64.3 57 52.6
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 7.6e-09 63.9 83 45.8
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 7.6e-09 63.9 80 43.8
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 1.0e-08 63.5 86 45.3
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 1.3e-08 63.2 84 44.0
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 1.7e-08 62.8 57 49.1
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 2.2e-08 62.4 91 38.5
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 5.0e-08 61.2 90 42.2
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 5.0e-08 61.2 48 56.2
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 8.5e-08 60.5 82 45.1
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 1.1e-07 60.1 37 62.2
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 1.1e-07 60.1 37 62.2
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 1.1e-07 60.1 37 62.2
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 1.4e-07 59.7 37 67.6
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.4e-07 59.7 37 62.2
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.4e-07 59.7 37 62.2
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 1.4e-07 59.7 38 63.2
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 1.9e-07 59.3 36 69.4
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 1.9e-07 59.3 38 63.2
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 1.9e-07 59.3 83 45.8
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 2.5e-07 58.9 80 42.5
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 5.5e-07 57.8 50 52.0
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 5.5e-07 57.8 37 56.8
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 7.2e-07 57.4 82 43.9
HanXRQChr01g0000881 Helianthus annuus HOM05D000786 ORTHO05D000779 7.2e-07 57.4 40 60.0
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 7.2e-07 57.4 94 40.4
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 7.2e-07 57.4 39 56.4
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 7.2e-07 57.4 48 56.2
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 9.3e-07 57.0 48 52.1
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 9.3e-07 57.0 71 43.7
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 9.3e-07 57.0 37 62.2
Pp3c2_8840 Physcomitrium patens HOM05D000786 ORTHO05D000779 9.3e-07 57.0 43 53.5
Ah.02g123730 Amaranthus hybridus HOM05D000786 ORTHO05D006216 1.2e-06 56.6 66 42.4
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 1.2e-06 56.6 48 50.0
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 1.2e-06 56.6 49 55.1
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 1.2e-06 56.6 37 62.2
Pp3c2_9080 Physcomitrium patens HOM05D000786 ORTHO05D000779 1.2e-06 56.6 40 55.0
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 1.2e-06 56.6 60 51.7
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 1.6e-06 56.2 62 46.8
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 1.6e-06 56.2 83 43.4
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 1.6e-06 56.2 37 62.2
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 1.6e-06 56.2 37 62.2
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 2.1e-06 55.8 37 62.2
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 2.7e-06 55.5 37 59.5
Ah.11g049440 Amaranthus hybridus HOM05D000786 ORTHO05D000779 2.7e-06 55.5 50 50.0
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 2.7e-06 55.5 37 62.2
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 2.7e-06 55.5 44 52.3
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 3.6e-06 55.1 62 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2913 Anthoceros agrestis HOM05D000786 ORTHO05D000779 4.6e-06 54.7 62 43.5
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 4.6e-06 54.7 37 59.5
Glyma.02G014500 Glycine max HOM05D000786 ORTHO05D000779 4.6e-06 54.7 35 60.0
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 4.6e-06 54.7 37 54.1
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 6.1e-06 54.3 37 59.5
arahy.Tifrunner.gnm1.ann1.C0YEFK Arachis hypogaea HOM05D000786 ORTHO05D000779 6.1e-06 54.3 36 63.9
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 6.1e-06 54.3 37 59.5
Lsat_1_v5_gn_9_25421 Lactuca sativa HOM05D000786 ORTHO05D000779 6.1e-06 54.3 40 55.0
Pp3c1_38930 Physcomitrium patens HOM05D000786 ORTHO05D000779 6.1e-06 54.3 43 53.5
EL10As5g23495 Beta vulgaris HOM05D000786 ORTHO05D000779 7.9e-06 53.9 37 62.2
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 7.9e-06 53.9 37 56.8


User provided reference genes

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