Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 4.5e-55 217.6 106 100.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 8.9e-35 150.2 86 86.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 4.9e-33 144.4 81 87.7
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.7e-30 136.0 83 81.9
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 6.6e-30 134.0 80 87.5
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 2.8e-28 128.6 84 71.4
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 6.2e-28 127.5 83 75.9
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.3e-27 125.6 88 67.0
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 2.0e-26 122.5 76 80.3
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.5e-26 120.6 93 64.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.5e-26 120.6 76 75.0
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.9e-25 118.6 94 63.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.1e-24 116.7 88 65.9
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.1e-24 116.7 80 66.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.1e-24 116.7 83 61.4
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.4e-24 116.3 88 65.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 2.4e-24 115.5 85 63.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.4e-24 115.5 87 60.9
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 3.2e-24 115.2 85 63.5
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 4.1e-24 114.8 74 74.3
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 9.2e-24 113.6 74 75.7
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-23 112.1 70 74.3
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 3.5e-23 111.7 89 55.1
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 3.5e-23 111.7 89 55.1
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.5e-23 111.7 87 60.9
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.6e-23 111.3 77 74.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.6e-23 111.3 67 74.6
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.6e-23 111.3 92 59.8
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 7.8e-23 110.5 93 57.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 7.8e-23 110.5 67 77.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.0e-22 110.2 79 68.4
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.0e-22 110.2 80 67.5
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.3e-22 109.8 88 59.1
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.3e-22 109.8 88 59.1
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.7e-22 109.4 87 57.5
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.7e-22 109.4 67 76.1
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.3e-22 109.0 87 57.5
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.3e-22 109.0 87 58.6
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.3e-22 109.0 74 64.9
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.3e-22 109.0 74 63.5
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.3e-22 109.0 74 64.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 3.0e-22 108.6 72 62.5
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 3.9e-22 108.2 67 73.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 5.0e-22 107.8 73 69.9
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 8.6e-22 107.1 87 56.3
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 8.6e-22 107.1 92 50.0
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 8.6e-22 107.1 88 58.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 8.6e-22 107.1 84 60.7
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 8.6e-22 107.1 80 63.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.5e-21 106.3 93 53.8
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.5e-21 106.3 78 65.4
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.5e-21 106.3 68 72.1
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.9e-21 105.9 74 64.9
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.5e-21 105.5 91 57.1
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.5e-21 105.5 83 63.9
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 2.5e-21 105.5 83 59.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.5e-21 105.5 85 56.5
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 3.3e-21 105.1 71 66.2
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 4.3e-21 104.8 74 63.5
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 4.3e-21 104.8 75 61.3
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.3e-21 104.8 74 64.9
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.6e-21 104.4 74 63.5
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.6e-21 104.4 74 63.5
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.6e-21 104.4 74 63.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 5.6e-21 104.4 74 63.5
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 5.6e-21 104.4 71 64.8
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 7.3e-21 104.0 91 52.7
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.3e-21 104.0 88 54.5
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.3e-21 104.0 88 54.5
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 9.5e-21 103.6 82 57.3
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 9.5e-21 103.6 97 52.6
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.2e-20 103.2 71 67.6
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-20 103.2 88 54.5
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.2e-20 103.2 67 70.1
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.6e-20 102.8 74 64.9
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.1e-20 102.4 83 57.8
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 2.1e-20 102.4 83 57.8
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.1e-20 102.4 76 61.8
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.1e-20 102.4 77 66.2
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 2.1e-20 102.4 74 62.2
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 2.8e-20 102.1 74 62.2
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.6e-20 101.7 83 61.4
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.7e-20 101.3 88 53.4
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 6.2e-20 100.9 74 62.2
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 8.1e-20 100.5 89 55.1
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 8.1e-20 100.5 71 64.8
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.1e-19 100.1 73 61.6
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.4e-19 99.8 79 59.5
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.3e-19 99.0 72 62.5
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.3e-19 99.0 78 59.0
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.1e-19 98.6 83 54.2
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 3.1e-19 98.6 80 57.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 4.0e-19 98.2 74 59.5
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 4.0e-19 98.2 74 59.5
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.8e-19 97.4 70 65.7
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.5e-18 96.3 74 62.2
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.0e-18 95.9 76 64.5
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.0e-18 95.9 67 67.2
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-18 95.9 87 56.3
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-18 95.9 79 58.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.0e-18 95.9 71 59.2
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.6e-18 95.5 75 61.3
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 4.4e-18 94.7 76 59.2
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.8e-18 93.6 76 63.2
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 9.8e-18 93.6 74 58.1
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 2.2e-17 92.4 83 59.0
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 4.9e-17 91.3 67 62.7
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 8.3e-17 90.5 74 56.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.4e-16 87.8 81 55.6
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.4e-16 87.8 81 55.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 5.4e-16 87.8 78 57.7
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.6e-15 86.3 76 55.3
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.6e-15 86.3 76 55.3
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 4.6e-15 84.7 72 56.9
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.7e-14 82.8 55 81.8
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.7e-14 82.8 99 43.4
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.1e-13 80.1 67 56.7
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 4.3e-13 78.2 60 63.3
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 9.5e-13 77.0 52 71.2
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 4.4e-10 68.2 56 55.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 5.8e-10 67.8 53 64.2
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 5.8e-10 67.8 56 64.3
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.2e-09 65.9 62 56.5
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 6.4e-09 64.3 42 69.0
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.4e-08 63.2 51 56.9
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.9e-08 62.8 42 71.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.4e-08 62.4 84 45.2
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.4e-08 61.2 40 72.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.1e-06 54.7 54 55.6


User provided reference genes

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