Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 2637.4 1358 100.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2103.2 1393 79.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2089.7 1383 79.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 2073.1 1362 79.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 2049.6 1360 79.2
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 2006.5 1363 77.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1959.9 1361 76.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1899.4 1366 74.6
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1858.6 1361 72.6
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1801.9 1541 64.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1707.2 1601 60.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1563.9 1381 60.4
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1546.2 1319 62.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1545.8 1395 59.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1533.1 1367 60.6
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1518.1 1365 59.4
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1516.5 1387 59.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1500.7 1363 58.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1499.2 1363 58.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1496.1 1363 58.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1493.0 1375 58.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1491.9 1368 59.9
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1489.2 1366 59.1
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1488.8 1368 59.9
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1476.1 1416 57.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1460.3 1384 57.5
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1459.9 1422 56.4
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1455.7 1389 57.5
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1437.9 1367 57.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1437.9 1380 57.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1429.5 1384 56.3
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1424.5 1331 58.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1419.1 1374 57.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1397.5 1470 53.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1395.9 1404 54.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1394.8 1402 55.9
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1379.4 1388 54.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1377.5 1380 55.9
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1372.8 1390 54.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1370.1 1371 55.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1367.1 1388 53.4
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1360.9 1211 60.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1357.8 1368 56.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1355.9 1405 53.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1350.1 1406 53.7
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1348.2 1386 52.6
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1344.7 1365 54.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1341.6 1370 54.6
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1337.8 1356 55.0
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1336.2 1343 56.1
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1333.9 1368 53.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1331.6 1387 53.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1327.4 1363 53.6
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1319.7 1358 54.5
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1314.7 1412 53.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1308.9 1374 52.8
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1302.7 1379 52.1
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1301.6 1381 54.5
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1298.9 1350 54.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1295.4 1409 51.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1293.1 1380 52.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1288.9 1353 53.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1283.1 1380 52.2
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1276.9 1484 51.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1269.6 1362 52.6
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1268.1 1364 52.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1268.1 1362 52.6
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1264.6 1364 52.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1264.2 1362 52.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1263.1 1378 52.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1260.0 1416 50.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1229.5 1378 50.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1209.5 1367 51.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1182.2 1415 47.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1173.7 1385 49.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1146.7 1134 56.3
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1120.1 1373 48.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1107.0 1374 46.4
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.0e-296 1023.1 1008 57.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.6e-296 1022.7 1116 52.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.4e-294 1015.0 1032 53.7
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 7.6e-288 994.6 1004 55.7
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.6e-274 950.3 1165 47.0
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.9e-261 904.8 1042 51.7
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-259 901.0 608 78.0
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.7e-252 874.8 1352 40.5
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.7e-242 844.0 826 55.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.7e-236 822.0 844 55.3
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.3e-228 797.0 735 57.7
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.5e-219 767.7 717 56.8
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 9.5e-206 721.8 838 50.2
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 3.0e-191 673.7 1354 36.3
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.2e-186 657.5 1433 33.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 7.1e-169 599.4 1436 32.1
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.7e-159 568.2 513 59.5
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.0e-147 528.1 435 62.8
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 2.6e-147 527.7 434 63.8
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.1e-141 508.1 545 51.6
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.9e-137 495.0 542 52.6
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 4.5e-131 473.8 331 71.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 8.5e-130 469.5 385 63.1
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.5e-129 468.0 674 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.4e-121 442.2 1036 33.2
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-109 402.5 402 59.2
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.5e-91 340.9 269 65.8
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.1e-88 332.0 481 39.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 4.1e-84 317.8 356 52.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.5e-81 309.3 905 31.8
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.4e-78 297.7 478 41.6
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.9e-74 284.6 578 37.4
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.3e-69 266.9 395 41.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-67 263.1 447 38.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-59 235.7 170 70.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 4.6e-59 234.6 230 57.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.9e-58 231.5 147 78.2
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-57 229.9 354 42.4
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-57 229.6 230 55.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-52 213.4 138 75.4
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 6.0e-51 207.6 195 57.4
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.3e-50 206.5 139 73.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.1e-49 203.4 591 32.0
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 5.6e-49 201.1 223 52.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.1e-48 199.1 148 70.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 6.9e-47 194.1 246 43.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.4e-45 187.2 193 53.9
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.3e-42 179.9 1221 22.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.8e-39 169.5 258 39.9
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 3.7e-32 145.2 168 47.6
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 6.2e-32 144.4 88 84.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.1e-31 143.7 215 45.6
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 5.8e-30 137.9 414 29.5
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.2e-29 136.0 138 52.2
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.9e-28 132.9 136 53.7
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.3e-26 126.7 362 26.8
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-25 123.2 85 71.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.9e-25 122.9 1214 21.9
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.7e-21 109.8 99 56.6
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 6.5e-21 107.8 165 44.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-20 106.3 81 65.4
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.9e-20 106.3 237 34.6
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 9.3e-20 104.0 577 23.6
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.0e-18 100.5 127 49.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 6.7e-18 97.8 90 52.2
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-17 96.3 64 79.7
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 9.7e-17 94.0 66 72.7
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.3e-16 93.6 100 45.0
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-16 92.0 51 88.2
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.4e-15 89.4 108 52.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.9e-15 87.8 290 30.3
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 9.0e-15 87.4 61 63.9
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 9.0e-15 87.4 94 44.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.9e-12 79.7 140 37.1
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.6e-11 76.6 73 56.2
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.0e-10 73.9 149 38.3
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.3e-10 72.8 149 38.3
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 8.8e-10 70.9 110 43.6
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-09 70.5 122 36.1
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.5e-09 70.1 110 43.6
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 2.8e-08 65.9 64 53.1
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 4.8e-08 65.1 95 38.9
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.4e-07 62.8 133 36.1
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.3e-07 61.6 134 35.1
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 9.1e-07 60.8 57 57.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 4.5e-06 58.5 99 37.4


User provided reference genes

Program Settings