Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-159 566.6 271 100.0
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 3.0e-119 432.2 264 84.5
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.4e-84 316.2 282 61.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 4.4e-78 295.4 283 56.9
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 5.7e-78 295.0 280 56.8
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-77 293.1 293 59.0
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 4.8e-77 292.0 282 57.1
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.1e-76 290.8 284 56.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.1e-76 289.3 280 57.1
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.6e-75 287.0 282 56.4
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.5e-74 281.6 254 57.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.1e-73 280.8 250 57.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.5e-73 280.4 276 55.1
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.9e-73 280.0 282 54.3
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.5e-73 279.6 251 57.8
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 3.2e-73 279.3 280 55.4
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 5.5e-73 278.5 241 58.9
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 9.4e-73 277.7 250 56.8
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.6e-72 276.9 276 53.3
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.6e-72 276.9 276 53.3
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.7e-72 275.4 274 54.4
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 4.7e-72 275.4 279 52.3
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 6.1e-72 275.0 276 52.9
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.1e-72 275.0 276 52.9
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 8.0e-72 274.6 239 57.3
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.0e-71 274.2 261 55.6
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.0e-71 274.2 261 55.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.0e-71 274.2 241 58.1
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.4e-71 273.9 282 53.2
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.4e-71 273.9 241 58.1
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.4e-71 273.9 284 52.1
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 2.3e-71 273.1 279 53.4
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 8.8e-71 271.2 278 52.9
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 8.8e-71 271.2 242 56.2
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 2.0e-70 270.0 282 53.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 4.4e-70 268.9 239 57.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 4.4e-70 268.9 222 60.4
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 4.4e-70 268.9 261 55.9
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.7e-70 268.5 268 51.9
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.3e-69 267.3 241 57.3
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 2.2e-69 266.5 277 52.0
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.2e-69 266.5 281 52.0
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 2.8e-69 266.2 239 56.1
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 3.7e-69 265.8 283 51.2
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 3.7e-69 265.8 260 53.8
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 4.8e-69 265.4 282 52.8
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.3e-69 265.0 255 54.5
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 8.2e-69 264.6 239 56.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 8.2e-69 264.6 241 54.4
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.2e-69 264.6 274 51.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.1e-68 264.2 240 55.4
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.8e-68 263.5 242 54.5
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.4e-68 263.1 267 52.8
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.4e-68 263.1 242 54.1
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 2.4e-68 263.1 240 54.2
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 3.1e-68 262.7 279 52.3
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.1e-68 262.3 236 56.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 5.3e-68 261.9 279 52.3
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 5.3e-68 261.9 241 54.8
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 9.1e-68 261.2 241 53.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.6e-67 260.4 262 52.3
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.6e-67 260.4 236 55.9
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.6e-67 260.4 283 53.0
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.0e-67 260.0 248 55.6
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.0e-67 260.0 248 55.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 3.5e-67 259.2 282 52.5
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 3.5e-67 259.2 282 52.5
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 3.5e-67 259.2 236 55.5
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 5.9e-67 258.5 277 50.2
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 7.7e-67 258.1 239 54.0
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 7.7e-67 258.1 236 55.5
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 7.7e-67 258.1 284 50.7
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.3e-66 257.3 280 48.9
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.7e-66 256.9 245 53.5
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 2.9e-66 256.1 236 55.1
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.9e-66 256.1 254 52.4
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 2.9e-66 256.1 269 50.9
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.8e-66 255.8 237 53.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.8e-66 255.8 276 50.7
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.0e-66 255.4 236 55.9
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.5e-66 255.0 254 52.4
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-65 254.2 236 55.5
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 2.5e-65 253.1 282 48.9
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 3.2e-65 252.7 262 51.5
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.2e-65 252.7 273 50.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 7.2e-65 251.5 239 53.1
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 7.2e-65 251.5 279 49.8
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 7.2e-65 251.5 251 51.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 9.4e-65 251.1 239 53.1
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-64 250.8 279 49.5
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-64 250.8 279 49.5
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.2e-64 250.8 279 49.5
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.6e-64 250.4 265 49.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.6e-64 250.4 236 55.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.1e-64 250.0 250 51.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.7e-64 249.6 236 54.2
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.4e-63 247.3 253 51.0
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.8e-63 246.9 268 49.6
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.8e-63 246.9 236 53.0
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.3e-63 246.5 279 49.1
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.3e-63 246.5 274 49.6
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-62 244.2 236 54.2
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.0e-62 243.4 238 53.4
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 2.6e-62 243.0 223 53.4
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 1.7e-61 240.4 241 52.3
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 2.2e-61 240.0 235 51.9
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 3.7e-61 239.2 259 51.0
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 4.1e-60 235.7 300 48.0
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 4.1e-60 235.7 281 47.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.1e-57 227.6 237 52.3
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.9e-57 226.9 205 54.6
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 5.5e-57 225.3 251 48.2
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 2.1e-56 223.4 403 36.5
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 2.1e-56 223.4 254 47.6
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 4.9e-53 212.2 230 49.1
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 6.3e-53 211.8 191 59.2
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 7.0e-52 208.4 240 46.7
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.2e-51 207.6 218 51.4
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.5e-51 205.7 243 45.7
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 7.8e-51 204.9 236 47.5
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 6.6e-50 201.8 242 45.5
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.1e-48 196.8 179 55.9
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.2e-46 191.0 239 43.5
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.3e-42 176.8 189 48.7
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.0e-42 176.4 169 54.4
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 3.3e-41 172.9 238 41.2
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 8.3e-37 158.3 192 43.8
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.5e-33 146.7 224 38.8
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.6e-32 144.1 125 58.4
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 2.8e-32 143.3 224 35.7
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.6e-32 142.9 136 52.9
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 2.0e-30 137.1 125 58.4
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 6.0e-27 125.6 184 38.6
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.6e-26 122.1 127 52.8
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 8.6e-26 121.7 193 37.8
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.4e-23 114.4 103 50.5
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 3.9e-18 96.3 113 51.3
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 6.2e-16 89.0 115 42.6
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.3e-15 85.9 166 35.5
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 6.9e-15 85.5 87 42.5
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 9.0e-15 85.1 123 39.8
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.5e-14 84.3 61 63.9
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-13 80.9 85 48.2
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.2e-12 76.3 99 40.4
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.5e-09 67.0 214 25.7
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.1e-08 63.9 219 29.7
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.3e-07 59.3 48 54.2


User provided reference genes

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