Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 0.0e+00 1079.3 553 100.0
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 1.6e-273 945.7 555 86.1
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.8e-273 944.9 555 85.4
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.1e-269 932.9 556 84.9
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 5.3e-264 914.1 555 84.0
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 4.5e-263 911.0 556 83.6
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 4.5e-263 911.0 556 83.6
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 3.8e-262 907.9 555 83.2
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 1.2e-260 902.9 555 82.5
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 9.7e-258 893.3 557 81.7
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.6e-244 849.4 558 77.6
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 2.8e-241 838.6 557 76.5
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.6e-236 822.8 557 75.2
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 2.1e-236 822.4 493 83.8
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 1.4e-235 819.7 557 74.1
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 2.3e-235 818.9 557 74.1
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 3.0e-235 818.5 557 75.9
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 3.9e-235 818.1 555 74.8
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.9e-235 818.1 557 74.0
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 3.9e-235 818.1 557 75.0
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.9e-235 818.1 557 75.2
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 6.7e-235 817.4 557 73.6
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 1.1e-234 816.6 557 75.6
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 2.0e-234 815.8 557 74.0
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 3.3e-234 815.1 557 75.6
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 4.4e-234 814.7 559 75.0
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.4e-234 813.9 557 73.8
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 7.4e-234 813.9 557 74.7
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 9.7e-234 813.5 557 73.8
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 9.7e-234 813.5 557 74.1
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 8.2e-233 810.4 557 74.0
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.1e-232 810.1 557 73.8
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 2.4e-232 808.9 557 75.2
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 2.6e-231 805.4 555 73.3
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 5.9e-231 804.3 558 74.0
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 8.5e-230 800.4 576 71.4
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 2.5e-229 798.9 558 73.1
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 4.7e-228 794.7 557 72.5
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 2.0e-226 789.3 557 71.6
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 5.7e-226 787.7 555 72.8
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 5.7e-226 787.7 575 71.0
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.2e-225 785.8 556 73.9
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.8e-224 782.7 578 70.4
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 5.3e-224 781.2 570 70.7
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 7.0e-224 780.8 535 74.8
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 1.2e-223 780.0 557 72.2
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.7e-223 778.9 553 72.0
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.7e-223 778.9 534 75.3
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 7.7e-223 777.3 557 71.6
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 2.2e-222 775.8 557 71.3
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 2.2e-222 775.8 584 68.8
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 6.5e-222 774.2 573 71.2
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 1.5e-221 773.1 558 72.2
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.9e-221 772.7 558 71.1
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 4.2e-221 771.5 571 70.4
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 2.1e-220 769.2 554 71.7
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 5.2e-219 764.6 554 72.0
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 6.8e-219 764.2 557 70.7
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.2e-218 763.5 587 68.3
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.2e-218 763.5 554 71.8
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 2.0e-218 762.7 557 69.8
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 2.0e-218 762.7 565 69.9
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 4.4e-218 761.5 580 67.1
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 7.5e-218 760.8 557 71.1
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 9.8e-218 760.4 555 70.3
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 6.3e-217 757.7 558 71.1
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 1.8e-216 756.1 557 69.8
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 2.0e-215 752.7 555 69.7
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 1.3e-214 750.0 557 69.5
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 2.3e-214 749.2 509 74.3
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 6.6e-214 747.7 556 69.6
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 3.3e-213 745.3 563 70.3
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 3.3e-213 745.3 556 69.6
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 4.2e-213 745.0 557 68.6
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 3.6e-212 741.9 558 71.0
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.0e-211 740.3 559 69.6
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 1.0e-211 740.3 556 68.7
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 8.9e-211 737.3 557 68.2
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 3.4e-210 735.3 516 73.3
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 3.7e-209 731.9 558 68.6
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 6.3e-209 731.1 557 67.7
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 7.0e-208 727.6 557 69.5
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 4.5e-207 724.9 563 66.8
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 7.8e-207 724.2 558 68.1
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.5e-205 719.9 558 66.8
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.9e-205 719.5 560 67.7
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 2.5e-205 719.2 556 68.2
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 3.3e-205 718.8 559 67.6
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.2e-204 716.8 534 69.1
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 1.8e-203 713.0 558 66.8
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.4e-202 708.4 558 65.6
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 1.3e-201 706.8 554 65.2
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 6.4e-201 704.5 554 64.8
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 1.1e-200 703.7 554 65.0
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 1.9e-200 703.0 560 65.5
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.2e-200 702.2 493 71.8
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 4.1e-200 701.8 552 64.7
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 7.0e-200 701.0 554 65.0
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 4.6e-199 698.4 495 72.5
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 3.9e-198 695.3 555 64.0
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 6.2e-196 688.0 553 65.5
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 1.3e-193 680.2 554 64.3
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 1.7e-193 679.9 554 64.4
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 9.2e-192 674.1 555 64.0
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 9.2e-192 674.1 555 64.0
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 1.0e-190 670.6 496 69.6
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 3.4e-186 655.6 553 62.4
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 4.9e-185 651.7 545 65.5
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.6e-183 646.7 552 61.2
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 3.5e-183 645.6 538 60.0
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 3.1e-171 605.9 556 59.0
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 2.1e-167 593.2 424 72.4
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 1.7e-166 590.1 503 64.4
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.6e-162 576.2 442 68.1
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 6.0e-159 565.1 565 54.0
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.5e-152 543.1 552 54.0
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 3.0e-150 536.2 398 70.9
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 3.9e-150 535.8 572 51.6
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 3.7e-148 529.3 457 61.5
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 8.2e-148 528.1 563 52.0
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 3.2e-144 516.2 542 53.1
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 2.3e-142 510.0 406 63.1
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 5.3e-139 498.8 357 72.3
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 5.7e-133 478.8 293 81.9
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 8.5e-129 464.9 567 51.0
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 1.5e-120 437.6 432 57.9
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 2.4e-115 420.2 537 47.7
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 1.8e-107 394.0 575 41.6
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 8.0e-103 378.6 282 69.1
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 9.8e-101 371.7 542 44.1
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 7.5e-85 318.9 199 78.4
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 7.1e-75 285.8 487 39.0
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 1.2e-63 248.4 374 43.6
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 5.3e-54 216.5 142 77.5
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 6.9e-54 216.1 282 46.1
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 1.0e-49 202.2 142 74.6
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.3e-41 174.5 144 60.4
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.5e-40 171.0 289 38.8
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 3.7e-39 167.2 189 53.4
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.1e-38 165.6 110 70.9
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 7.9e-34 149.4 118 62.7
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.7e-32 143.3 88 80.7
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.1e-30 139.0 77 87.0
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 3.1e-30 137.5 99 65.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.3e-25 122.1 156 46.2
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.5e-21 108.6 85 62.4
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 3.0e-17 94.4 84 58.3
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 6.7e-17 93.2 204 32.8
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 4.4e-16 90.5 85 60.0
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 6.3e-15 86.7 73 57.5


User provided reference genes

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