Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 0.0e+00 1217.6 643 100.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.5e-281 971.8 644 77.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.2e-280 969.5 648 78.5
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.2e-280 969.5 641 76.8
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.6e-280 969.1 644 77.5
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 3.6e-264 914.8 644 72.2
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.4e-263 912.9 649 73.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 5.0e-258 894.4 652 74.1
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 5.0e-258 894.4 652 74.1
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 3.6e-248 861.7 660 68.5
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 3.9e-242 841.6 645 67.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 8.1e-240 833.9 643 67.8
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.4e-239 833.2 647 67.5
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.1e-239 832.0 647 66.6
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.2e-238 830.1 647 67.9
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.7e-237 826.2 648 67.0
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.2e-236 822.0 535 77.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.2e-236 821.6 647 67.4
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.2e-236 821.6 652 66.3
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 7.1e-236 820.8 652 67.3
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.7e-235 818.9 650 65.1
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.8e-232 808.1 655 64.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 3.1e-231 805.4 655 65.3
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 4.2e-228 795.0 527 78.9
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.6e-227 793.1 652 63.5
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 3.9e-226 788.5 642 63.4
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.1e-226 788.1 652 64.6
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 6.6e-226 787.7 614 67.4
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 9.6e-225 783.9 661 61.1
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 4.8e-224 781.6 665 63.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.4e-223 779.2 651 63.4
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 5.3e-223 778.1 664 61.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.8e-222 774.6 654 62.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 3.8e-221 771.9 667 62.2
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.6e-219 766.5 651 62.8
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.6e-219 765.0 656 62.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.0e-219 764.6 652 61.7
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 6.0e-219 764.6 664 61.9
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.3e-218 763.5 641 61.3
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 3.9e-218 761.9 654 61.5
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 8.7e-218 760.8 665 62.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.9e-217 759.6 641 60.8
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.2e-216 754.6 663 61.8
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.4e-215 753.4 653 61.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.8e-215 753.1 648 61.1
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.5e-214 750.0 661 59.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 2.0e-214 749.6 661 61.7
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.8e-214 748.0 649 63.0
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 8.4e-213 744.2 651 59.1
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.4e-212 743.4 652 60.7
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.4e-212 743.4 654 59.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.8e-210 736.5 639 60.9
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 2.3e-210 736.1 654 60.6
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.0e-210 735.7 693 56.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.5e-209 733.4 642 61.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 3.3e-209 732.3 649 62.2
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 5.7e-209 731.5 641 61.8
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.3e-208 730.3 650 61.1
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.1e-208 729.6 647 61.4
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 3.7e-208 728.8 661 61.6
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 8.2e-208 727.6 654 60.9
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 8.2e-208 727.6 641 61.6
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.1e-207 727.2 656 60.1
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.4e-207 726.1 648 61.0
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.1e-207 725.7 643 59.9
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 5.3e-207 724.9 648 58.8
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.1e-204 717.2 656 59.3
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.9e-204 716.5 658 57.9
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.5e-204 716.1 680 58.1
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 5.5e-204 714.9 644 58.2
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 5.5e-204 714.9 649 59.0
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.5e-203 712.2 646 60.2
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 7.9e-203 711.1 654 58.0
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.0e-202 710.7 660 57.9
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.9e-202 708.8 652 58.6
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 3.3e-201 705.7 645 59.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 4.3e-201 705.3 648 57.7
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 7.4e-201 704.5 646 59.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.6e-200 703.4 611 62.4
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 2.6e-198 696.0 642 58.1
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-187 660.2 594 60.6
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 3.0e-186 656.0 489 66.7
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-184 650.2 570 61.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-183 647.5 659 54.0
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 4.1e-183 645.6 684 52.3
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 4.0e-178 629.0 646 52.0
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.6e-174 617.1 685 51.2
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.7e-174 614.8 648 55.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 6.8e-170 601.7 493 64.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.3e-168 597.4 540 59.4
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.2e-168 596.7 648 52.8
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.8e-162 577.0 696 47.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.8e-162 577.0 646 48.8
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.6e-161 573.2 526 61.4
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.4e-159 567.4 497 57.5
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.8e-154 550.4 607 52.2
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.8e-154 548.5 591 52.5
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.4e-146 524.2 483 59.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.7e-133 480.7 641 43.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.3e-125 454.5 443 57.3
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 8.9e-122 441.8 284 75.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 7.1e-119 432.2 750 37.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 6.6e-117 425.6 286 80.1
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 4.4e-113 412.9 648 40.6
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-101 374.8 389 55.3
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.8e-98 364.4 291 67.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 8.4e-96 355.5 338 59.5
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.9e-95 354.4 585 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.5e-95 354.0 644 36.3
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 8.2e-91 339.0 294 63.6
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.8e-83 313.9 339 51.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.5e-81 308.1 425 47.1
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.1e-78 296.2 516 37.8
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.2e-71 273.5 333 48.3
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.1e-66 257.3 206 66.0
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.7e-60 236.5 177 65.0
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 5.9e-57 226.5 381 40.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 5.7e-52 209.9 196 55.1
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.1e-50 204.1 149 65.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.7e-49 201.1 384 40.1
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-47 194.9 155 62.6
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.8e-42 178.3 121 62.8
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.9e-40 171.0 326 35.3
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 3.5e-33 147.5 682 27.7
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.4e-29 135.6 176 51.7
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 4.4e-20 104.0 99 54.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 9.8e-20 102.8 63 76.2
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.4e-18 98.2 63 73.0
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 5.4e-18 97.1 61 82.0
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.6e-14 85.5 90 46.7
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-14 85.5 57 68.4
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 3.6e-14 84.3 161 36.0
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.8e-13 82.0 55 70.9
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 4.0e-13 80.9 87 49.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.6e-12 78.2 99 48.5
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 3.2e-10 71.2 87 47.1
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 9.6e-07 59.7 102 36.3


User provided reference genes

Program Settings