Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 8.9e-96 354.0 180 100.0
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 8.6e-83 310.8 180 86.7
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 8.9e-80 300.8 173 87.9
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 2.6e-79 299.3 180 85.0
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 3.4e-79 298.9 178 86.0
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 7.6e-79 297.7 173 86.1
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.2e-76 290.4 173 85.0
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.6e-76 290.0 173 85.0
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.2e-73 280.4 176 82.4
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.6e-71 272.7 180 77.2
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 6.4e-70 268.1 180 77.8
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 3.2e-69 265.8 180 76.7
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 5.4e-69 265.0 179 77.1
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.6e-68 261.9 165 80.0
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 7.8e-68 261.2 182 74.7
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 1.0e-67 260.8 175 76.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.0e-67 260.8 175 74.3
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 73.9
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.3e-67 260.4 183 73.8
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.7e-67 260.0 183 72.7
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.7e-67 260.0 183 72.7
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.3e-67 259.6 180 75.0
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 3.0e-67 259.2 183 73.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 8.7e-67 257.7 177 74.6
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 1.5e-66 256.9 188 75.0
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 1.5e-66 256.9 184 72.3
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 2.5e-66 256.1 134 94.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 3.3e-66 255.8 179 74.9
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.3e-66 255.8 179 74.9
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 4.3e-66 255.4 181 73.5
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 7.3e-66 254.6 175 73.7
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 7.3e-66 254.6 175 73.7
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 2.8e-65 252.7 151 81.5
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 3.6e-65 252.3 177 73.4
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 4.8e-65 251.9 181 76.2
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.8e-65 251.9 183 74.3
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 4.8e-65 251.9 181 73.5
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 6.2e-65 251.5 180 72.2
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 8.1e-65 251.1 145 86.9
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.1e-64 250.8 183 72.7
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.1e-64 250.8 180 72.8
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.4e-64 250.4 182 70.3
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.8e-64 250.0 181 73.5
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.1e-64 249.2 193 67.9
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 5.3e-64 248.4 171 74.9
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 9.0e-64 247.7 174 73.6
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.5e-63 246.9 151 79.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 1.5e-63 246.9 159 78.0
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.6e-63 246.1 185 69.2
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 3.4e-63 245.7 162 77.2
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 3.4e-63 245.7 181 70.2
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 4.5e-63 245.4 160 75.6
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 7.6e-63 244.6 180 70.0
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.7e-62 243.4 183 69.4
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.7e-62 243.4 181 69.1
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.7e-62 243.4 181 69.1
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.9e-62 242.7 182 68.7
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 3.8e-62 242.3 187 69.5
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 4.9e-62 241.9 163 76.1
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 6.4e-62 241.5 171 73.1
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 1.1e-61 240.7 177 73.4
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.4e-61 239.6 176 69.9
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.2e-61 239.2 186 71.5
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 5.4e-61 238.4 181 67.4
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 7.1e-61 238.0 178 68.5
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 7.1e-61 238.0 178 68.5
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 7.1e-61 238.0 144 78.5
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 9.3e-61 237.7 147 79.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.2e-60 237.3 172 70.3
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.1e-60 236.5 191 67.0
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.7e-60 236.1 190 63.2
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.7e-60 236.1 190 63.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.5e-60 235.7 167 73.1
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 4.6e-60 235.3 191 65.4
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 6.0e-60 235.0 184 70.1
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.0e-59 234.2 172 72.1
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.0e-59 234.2 145 80.7
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 1.3e-59 233.8 137 84.7
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 1.8e-59 233.4 188 62.8
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 1.8e-59 233.4 188 62.8
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 3.0e-59 232.6 144 79.9
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 5.1e-59 231.9 182 65.9
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.7e-59 231.5 186 68.8
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 2.5e-58 229.6 178 69.7
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.2e-55 220.7 154 74.7
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.5e-55 220.3 218 56.9
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.9e-53 213.4 242 50.0
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.9e-53 213.4 178 63.5
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.3e-51 207.2 161 66.5
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.7e-46 190.3 179 59.8
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 4.6e-44 182.2 132 70.5
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 7.9e-44 181.4 161 57.8
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.3e-43 180.6 167 59.3
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.8e-43 180.3 181 55.2
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.8e-40 170.2 91 86.8
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.1e-40 169.5 140 68.6
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 9.0e-40 167.9 127 71.7
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 5.0e-38 162.2 138 64.5
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 7.2e-37 158.3 181 54.7
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.5e-34 149.8 196 46.9
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-30 137.5 120 69.2
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-30 137.5 120 69.2
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.1e-28 130.2 131 55.0
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 1.3e-25 120.9 147 46.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 4.5e-23 112.5 102 62.7
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 4.2e-21 105.9 84 72.6
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 5.5e-21 105.5 101 64.4
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.6e-20 104.0 65 84.6
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.1e-16 91.3 108 45.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 3.5e-15 86.3 55 78.2
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 1.2e-10 71.2 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 2.6e-10 70.1 31 90.3
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 3.7e-09 66.2 115 46.1
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 8.2e-09 65.1 31 83.9
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.1e-08 62.8 99 41.4
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 7.7e-07 58.5 25 92.0


User provided reference genes

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