Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 8.8e-182 640.2 331 100.0
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.4e-134 483.4 334 79.0
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.5e-133 479.9 333 79.0
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 6.4e-132 474.6 336 80.4
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 8.4e-132 474.2 336 79.2
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 1.1e-131 473.8 334 78.1
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 6.0e-130 468.0 347 75.2
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 1.0e-129 467.2 337 77.4
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 4.8e-127 458.4 342 75.4
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 3.4e-125 452.2 332 77.1
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 3.2e-123 445.7 331 75.8
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 6.7e-113 411.4 354 69.2
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 5.6e-112 408.3 369 66.4
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 7.6e-109 397.9 368 66.0
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 3.2e-107 392.5 351 67.2
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.0e-100 368.6 238 81.5
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 4.3e-88 328.9 333 58.6
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 9.1e-86 321.2 328 55.2
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 2.0e-85 320.1 333 56.2
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 7.7e-85 318.2 327 54.7
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 1.7e-84 317.0 353 54.1
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 5.0e-84 315.5 327 54.4
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 6.5e-84 315.1 327 56.6
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 8.5e-84 314.7 328 57.6
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 1.1e-83 314.3 352 53.4
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-82 310.8 357 53.2
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 3.6e-82 309.3 330 53.6
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 4.7e-82 308.9 361 52.9
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 4.7e-82 308.9 337 56.1
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 7.9e-82 308.1 361 52.6
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.3e-81 306.6 365 52.1
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.3e-81 306.6 358 52.2
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 1.3e-79 300.8 326 54.9
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 5.3e-78 295.4 328 53.0
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 1.0e-76 291.2 331 52.0
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 1.7e-76 290.4 330 51.2
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 6.7e-73 278.5 332 47.9
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 6.7e-73 278.5 339 49.9
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 1.7e-71 273.9 335 49.9
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 4.8e-71 272.3 352 47.7
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.4e-70 270.0 331 49.2
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 3.1e-70 269.6 332 50.6
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.6e-69 267.3 332 47.9
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.7e-69 266.5 330 47.9
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 3.5e-69 266.2 330 47.9
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 3.5e-69 266.2 335 48.7
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.7e-68 263.8 333 49.2
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.2e-68 263.5 329 48.3
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 2.9e-68 263.1 333 49.5
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 8.5e-68 261.5 333 49.8
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 1.1e-67 261.2 330 48.2
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 3.2e-67 259.6 316 48.1
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 5.5e-67 258.8 325 47.4
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 9.4e-67 258.1 344 47.1
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 1.2e-66 257.7 344 47.1
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 1.2e-66 257.7 328 48.2
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.6e-66 257.3 325 48.0
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 2.1e-66 256.9 344 47.4
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 3.6e-66 256.1 335 46.3
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 6.1e-66 255.4 344 47.1
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 8.0e-66 255.0 320 47.5
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 2.3e-65 253.4 324 47.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 3.0e-65 253.1 332 48.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 3.0e-65 253.1 334 46.7
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 4.0e-65 252.7 337 50.4
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 8.8e-65 251.5 330 48.8
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 2.0e-64 250.4 340 49.1
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 2.6e-64 250.0 316 49.1
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.3e-63 247.7 335 48.4
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 1.7e-63 247.3 328 45.4
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 6.3e-63 245.4 333 49.8
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 8.3e-63 245.0 312 48.4
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.4e-62 244.2 328 48.8
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 1.8e-62 243.8 321 45.2
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 3.1e-62 243.0 366 45.1
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 4.1e-62 242.7 326 45.4
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 7.0e-62 241.9 310 49.0
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.2e-61 241.1 251 58.2
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.3e-60 237.7 343 46.6
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.2e-60 236.9 321 46.1
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 6.5e-60 235.3 246 54.9
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 1.5e-59 234.2 323 44.3
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 1.6e-58 230.7 314 43.6
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 2.1e-58 230.3 317 46.4
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.7e-58 229.9 334 42.8
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 5.2e-57 225.7 330 42.7
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 8.8e-57 224.9 337 45.7
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 9.2e-54 214.9 328 45.4
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.7e-47 194.1 249 49.0
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 2.2e-47 193.7 335 41.5
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.5e-45 186.4 243 46.5
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 2.3e-44 183.7 201 55.7
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 3.0e-44 183.3 289 42.9
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 5.0e-44 182.6 281 44.5
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 6.6e-44 182.2 356 37.9
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.2e-42 177.9 253 45.5
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 4.7e-42 176.0 307 40.4
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 8.0e-42 175.3 261 44.4
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 5.8e-40 169.1 364 35.2
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 1.7e-39 167.5 285 40.4
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.9e-38 164.1 299 38.8
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 1.6e-37 161.0 296 36.1
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 7.8e-37 158.7 239 43.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.7e-36 157.5 233 42.9
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 5.0e-36 156.0 286 37.1
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 1.1e-35 154.8 238 42.4
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.5e-35 153.7 205 44.9
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 4.3e-35 152.9 236 41.9
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 4.3e-35 152.9 236 41.9
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 4.3e-35 152.9 236 41.9
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 7.3e-35 152.1 288 35.4
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 9.5e-35 151.8 286 34.6
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 2.8e-34 150.2 238 41.6
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.8e-34 150.2 264 36.4
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.7e-34 149.4 235 40.9
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 8.9e-33 145.2 232 40.9
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 2.6e-32 143.7 251 39.8
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 4.4e-32 142.9 239 38.5
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 4.4e-32 142.9 254 37.8
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 5.8e-32 142.5 279 35.1
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 9.8e-32 141.7 286 33.9
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.2e-31 140.6 233 38.6
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.9e-31 140.2 239 37.7
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 6.4e-31 139.0 287 33.8
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.7e-29 133.7 288 33.7
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-28 131.7 288 33.3
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 1.3e-28 131.3 288 33.3
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.3e-28 130.6 250 38.0
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 5.1e-28 129.4 288 33.0
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 5.1e-28 129.4 288 33.0
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 2.4e-22 110.5 200 35.0
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 2.4e-22 110.5 279 31.5
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.2e-22 110.2 279 31.2
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 4.7e-18 96.3 188 36.2
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 4.7e-18 96.3 188 36.2
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 3.1e-17 93.6 183 36.6
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 4.0e-17 93.2 188 33.0
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.3e-15 88.2 169 34.3
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 3.8e-15 86.7 115 43.5
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.9e-14 84.3 175 32.0
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.6e-13 81.3 275 28.0
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-12 77.4 153 35.3
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-12 77.4 154 35.1
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 8.7e-12 75.5 153 34.6
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 5.3e-09 66.2 135 30.4
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 5.3e-09 66.2 135 30.4
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 2.9e-07 60.5 129 31.0
Prupe.1G217400 Prunus persica HOM05D000592 ORTHO05D000900 1.1e-06 58.5 205 28.3
Ca_15066_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 4.2e-06 56.6 39 59.0
Manes.09G186700 Manihot esculenta HOM05D000592 ORTHO05D000900 5.4e-06 56.2 82 36.6
Gohir.A11G117900 Gossypium hirsutum HOM05D000592 ORTHO05D000900 7.1e-06 55.8 195 28.2
Gohir.D11G122800 Gossypium hirsutum HOM05D000592 ORTHO05D000900 7.1e-06 55.8 178 29.2
Hma1.2p1_0602F.1_g187540 Hydrangea macrophylla HOM05D000592 ORTHO05D001485 7.1e-06 55.8 308 23.1
Lalb_Chr18g0054151 Lupinus albus HOM05D000592 ORTHO05D000900 7.1e-06 55.8 55 47.3
Medtr3g467610 Medicago truncatula HOM05D000592 ORTHO05D000900 9.3e-06 55.5 39 56.4


User provided reference genes

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