Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.2e-257 892.9 522 100.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.5e-217 758.4 522 80.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 8.2e-182 641.0 528 72.2
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.1e-181 640.6 525 71.6
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 9.3e-178 627.5 527 67.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.3e-176 623.6 528 69.3
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 6.7e-176 621.3 525 69.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.2e-163 579.7 527 66.0
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.0e-159 566.6 529 64.3
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.7e-153 546.2 561 61.0
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.8e-144 516.9 527 59.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 3.7e-142 509.2 525 60.8
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-136 490.7 560 54.6
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.7e-135 485.3 537 56.2
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.7e-131 473.8 537 58.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 5.0e-131 472.2 555 55.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.1e-129 466.8 553 53.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.7e-127 458.8 558 50.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.7e-126 457.2 534 56.9
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.8e-126 456.4 558 51.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.8e-126 456.4 558 51.4
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.1e-125 453.0 558 51.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 7.0e-125 451.8 566 52.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 5.9e-124 448.7 556 53.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.8e-124 448.4 556 52.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.7e-123 447.2 560 49.6
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.9e-123 446.4 557 51.2
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 6.6e-123 445.3 537 55.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.6e-123 445.3 577 52.5
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 3.3e-122 443.0 566 54.2
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 7.3e-122 441.8 565 49.9
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.1e-121 438.7 557 54.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.0e-120 438.0 565 51.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.1e-120 436.4 570 51.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.2e-120 435.6 562 51.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 8.9e-120 434.9 561 53.3
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.2e-119 434.5 565 52.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.5e-119 431.8 557 52.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.3e-118 431.0 554 52.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 6.4e-118 428.7 544 51.5
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.7e-116 423.3 556 48.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.1e-114 417.9 539 53.1
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.2e-113 414.5 557 51.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.1e-113 413.7 562 47.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 7.5e-111 405.2 544 51.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.3e-110 404.4 555 51.9
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.7e-110 404.1 568 48.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.2e-110 403.7 529 50.5
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 9.2e-109 398.3 557 50.3
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-108 397.5 561 50.1
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.3e-107 393.7 562 49.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.1e-107 392.5 557 47.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 6.6e-107 392.1 550 51.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-106 391.0 550 47.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.5e-106 390.2 555 49.4
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.6e-106 389.0 555 45.6
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.6e-105 387.5 531 51.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.1e-105 387.1 622 46.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 6.2e-105 385.6 553 46.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.0e-104 382.9 547 48.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 6.8e-104 382.1 547 49.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.7e-102 376.3 481 50.1
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.7e-102 376.3 537 48.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.9e-102 375.9 552 49.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.4e-101 374.4 540 47.6
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.9e-101 374.0 538 48.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 3.5e-100 369.8 539 49.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.7e-99 367.5 554 50.0
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.0e-99 366.7 466 48.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.0e-99 366.7 557 44.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.9e-99 366.3 603 43.8
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.1e-99 365.9 546 52.2
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.9e-98 364.0 479 48.9
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.5e-98 363.6 547 49.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.5e-98 363.6 547 49.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 4.3e-98 362.8 557 44.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 9.5e-98 361.7 538 42.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.2e-97 361.3 539 46.8
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.6e-97 360.9 582 42.6
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 4.7e-97 359.4 459 51.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.4e-96 357.8 537 49.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.4e-96 357.1 534 46.3
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.4e-96 357.1 534 47.9
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.7e-94 350.9 537 46.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.7e-94 350.9 470 49.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.8e-94 349.7 544 47.4
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 6.4e-94 349.0 563 43.9
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-93 348.2 548 47.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.2e-93 345.1 542 46.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.7e-92 343.6 537 45.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.5e-92 343.2 538 47.2
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.5e-92 343.2 544 46.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 6.0e-92 342.4 470 48.9
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.0e-91 341.7 547 47.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.3e-91 340.5 543 42.7
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.5e-90 337.8 539 47.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.9e-90 337.4 436 51.4
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.6e-89 334.3 516 45.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-88 330.9 539 45.3
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.6e-87 327.0 472 46.2
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 7.6e-87 325.5 542 45.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 9.9e-87 325.1 547 45.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 9.9e-87 325.1 545 41.1
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.7e-86 324.3 583 39.6
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.7e-86 324.3 528 43.8
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.1e-85 321.6 648 38.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.5e-84 316.6 548 45.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.5e-84 316.6 548 45.3
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.0e-83 313.5 568 40.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.8e-72 277.7 296 55.1
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 3.4e-71 273.5 370 47.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 5.5e-69 266.2 520 41.9
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.1e-68 264.2 587 37.0
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 6.0e-68 262.7 563 39.4
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.0e-67 261.9 531 41.6
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.8e-65 253.1 526 40.9
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.8e-65 253.1 526 40.9
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 6.2e-65 252.7 301 52.8
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 5.0e-62 243.0 320 49.1
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 7.7e-55 219.2 415 42.9
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.8e-49 199.9 417 42.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.4e-48 198.4 610 30.7
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-44 183.7 301 42.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.1e-43 179.9 590 31.4
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.6e-42 177.6 425 35.5
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.3e-41 175.3 256 53.1
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.8e-41 174.1 193 50.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.9e-38 164.1 152 58.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.1e-37 162.2 299 41.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.7e-34 149.8 527 30.9
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.0e-30 139.0 617 28.4
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.9e-30 137.5 113 61.9
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.1e-28 131.3 257 42.8
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.7e-26 123.2 221 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.7e-25 121.7 461 30.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 8.3e-25 119.4 219 42.0
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 2.0e-23 114.8 458 29.3
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.8e-19 99.8 88 55.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-14 84.3 118 43.2
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.6e-14 82.8 86 47.7
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.1e-13 82.4 370 28.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.2e-13 79.7 146 42.5
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.1e-12 78.2 170 37.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.2e-10 72.4 174 30.5
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.5e-10 72.0 146 37.7
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.4e-10 70.5 72 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.7e-10 70.1 428 26.2
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.7e-07 61.2 253 28.1
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.9e-07 60.1 150 36.0


User provided reference genes

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