Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 4.1e-51 204.5 110 100.0
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 9.9e-29 130.2 110 71.8
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 8.3e-28 127.1 108 68.5
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 8.3e-28 127.1 110 70.9
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 8.3e-28 127.1 108 71.3
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 2.7e-26 122.1 110 70.9
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 3.5e-26 121.7 108 68.5
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 6.0e-26 120.9 107 72.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 1.8e-22 109.4 107 68.2
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 4.0e-22 108.2 105 64.8
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 8.9e-22 107.1 113 64.6
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 2.6e-21 105.5 107 67.3
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 9.9e-21 103.6 106 64.2
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 8.4e-20 100.5 108 60.2
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.1e-19 100.1 108 59.3
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 3.2e-19 98.6 108 59.3
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 7.1e-19 97.4 108 60.2
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 9.2e-19 97.1 108 58.3
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 9.2e-19 97.1 108 58.3
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 9.2e-19 97.1 109 59.6
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 2.7e-18 95.5 108 58.3
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 4.6e-18 94.7 108 58.3
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 2.3e-17 92.4 108 55.6
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 3.9e-17 91.7 108 59.3
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.5e-16 89.7 109 57.8
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 1.9e-16 89.4 108 55.6
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 7.3e-16 87.4 109 56.9
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.1e-15 85.9 108 53.7
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 3.6e-15 85.1 106 55.7
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 3.6e-15 85.1 115 53.0
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 4.7e-15 84.7 108 54.6
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.1e-14 83.6 109 54.1
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.8e-14 82.8 108 53.7
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 6.9e-14 80.9 108 52.8
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 6.9e-14 80.9 113 54.0
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.2e-13 80.1 109 54.1
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 1.5e-13 79.7 109 54.1
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 3.4e-13 78.6 108 54.6
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.4e-13 78.6 108 55.6
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 7.6e-13 77.4 112 53.6
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.3e-12 76.6 104 50.0
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 2.2e-12 75.9 108 50.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.9e-12 75.5 107 47.7
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.9e-12 75.5 108 49.1
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 8.4e-12 73.9 111 51.4
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 8.4e-12 73.9 41 87.8
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.9e-11 72.8 108 52.8
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 2.4e-11 72.4 103 51.5
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 3.2e-11 72.0 116 50.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 4.2e-11 71.6 111 50.5
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 7.1e-11 70.9 108 50.9
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 7.1e-11 70.9 102 52.9
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 1.2e-10 70.1 102 52.9
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 1.6e-10 69.7 108 50.0
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 3.5e-10 68.6 112 49.1
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.5e-10 68.6 92 55.4
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 4.6e-10 68.2 108 50.9
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 7.8e-10 67.4 112 45.5
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 7.8e-10 67.4 113 47.8
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 2.3e-09 65.9 108 49.1
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.3e-09 65.9 109 48.6
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 3.0e-09 65.5 105 48.6
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 3.9e-09 65.1 112 45.5
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.1e-08 63.5 116 44.8
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.5e-08 62.4 105 49.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.5e-08 62.4 105 49.5
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 4.3e-08 61.6 111 49.5
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 4.3e-08 61.6 105 49.5
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 5.6e-08 61.2 110 49.1
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 5.6e-08 61.2 110 50.0
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 5.6e-08 61.2 110 49.1
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.6e-08 61.2 110 44.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 7.3e-08 60.8 109 43.1
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 9.6e-08 60.5 66 62.1
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.1e-07 59.3 109 43.1
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.1e-07 59.3 105 45.7
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.8e-07 58.9 46 71.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 3.6e-07 58.5 108 45.4
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.8e-07 58.2 110 42.7
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 6.2e-07 57.8 110 48.2
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 8.1e-07 57.4 89 55.1
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 8.1e-07 57.4 46 71.7
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 1.8e-06 56.2 104 45.2
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 3.1e-06 55.5 108 40.7
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 3.1e-06 55.5 111 36.9
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 3.1e-06 55.5 104 42.3
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.3e-06 54.7 102 46.1
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 5.3e-06 54.7 110 41.8


User provided reference genes

Program Settings